Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 SEC1P-202ENST00000473944 940 ntBASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 AC010653.2-201ENST00000623505 997 ntBASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 AC024243.1-201ENST00000609234 778 ntBASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 AC100803.2-201ENST00000562459 1963 ntBASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TCRBV7S3A2A0A539 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 EGLN1P1-201ENST00000531623 762 ntBASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 MIR3180-4-201ENST00000582223 153 ntBASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TCRBV7S3A2A0A539 AC020916.1-201ENST00000587762 1774 ntBASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 AC009947.2-201ENST00000444014 672 ntBASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.47■□□□□ 0.55
TCRBV7S3A2A0A539 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms