Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 RNPS1P1-201ENST00000507437 918 ntBASIC21.42■■□□□ 1.02
DDX4Q9NQI0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 AC023511.2-201ENST00000618803 211 ntBASIC21.42■■□□□ 1.02
DDX4Q9NQI0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
DDX4Q9NQI0 AF228730.7-201ENST00000641842 219 ntBASIC21.42■■□□□ 1.02
DDX4Q9NQI0 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 RBM17P3-201ENST00000417687 1192 ntBASIC21.41■■□□□ 1.02
DDX4Q9NQI0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 AF186996.4-201ENST00000467186 377 ntBASIC21.41■■□□□ 1.02
DDX4Q9NQI0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
DDX4Q9NQI0 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.4■■□□□ 1.02
DDX4Q9NQI0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.4■■□□□ 1.02
DDX4Q9NQI0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC21.4■■□□□ 1.02
DDX4Q9NQI0 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
DDX4Q9NQI0 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.39■■□□□ 1.02
DDX4Q9NQI0 AP005117.1-201ENST00000584346 1413 ntBASIC21.39■■□□□ 1.02
DDX4Q9NQI0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.39■■□□□ 1.02
DDX4Q9NQI0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
DDX4Q9NQI0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.39■■□□□ 1.02
DDX4Q9NQI0 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
DDX4Q9NQI0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 FAM215A-202ENST00000632077 792 ntBASIC21.39■■□□□ 1.01
DDX4Q9NQI0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX4Q9NQI0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.38■■□□□ 1.01
DDX4Q9NQI0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX4Q9NQI0 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms