Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX2Q99626 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX2Q99626 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 AL121761.2-201ENST00000598007 1648 ntBASIC18.93■□□□□ 0.62
CDX2Q99626 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX2Q99626 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX2Q99626 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
CDX2Q99626 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.93■□□□□ 0.62
CDX2Q99626 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.93■□□□□ 0.62
CDX2Q99626 LINC02560-201ENST00000596379 459 ntBASIC18.93■□□□□ 0.62
CDX2Q99626 AL606495.2-201ENST00000605867 535 ntBASIC18.93■□□□□ 0.62
CDX2Q99626 AC010654.1-201ENST00000615722 808 ntBASIC18.93■□□□□ 0.62
CDX2Q99626 AC008761.3-201ENST00000624803 892 ntBASIC18.93■□□□□ 0.62
CDX2Q99626 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.93■□□□□ 0.62
CDX2Q99626 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX2Q99626 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX2Q99626 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX2Q99626 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX2Q99626 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CDX2Q99626 SPDYE21P-201ENST00000413323 827 ntBASIC18.92■□□□□ 0.62
CDX2Q99626 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.92■□□□□ 0.62
CDX2Q99626 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CDX2Q99626 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.92■□□□□ 0.62
CDX2Q99626 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.92■□□□□ 0.62
CDX2Q99626 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.92■□□□□ 0.62
CDX2Q99626 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.92■□□□□ 0.62
CDX2Q99626 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX2Q99626 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX2Q99626 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CDX2Q99626 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX2Q99626 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CDX2Q99626 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX2Q99626 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CDX2Q99626 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX2Q99626 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.92■□□□□ 0.62
CDX2Q99626 KRT8P47-201ENST00000604727 1398 ntBASIC18.92■□□□□ 0.62
CDX2Q99626 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
CDX2Q99626 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.91■□□□□ 0.62
CDX2Q99626 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.91■□□□□ 0.62
CDX2Q99626 RHOQP3-201ENST00000437982 621 ntBASIC18.91■□□□□ 0.62
CDX2Q99626 FAM207CP-201ENST00000443486 507 ntBASIC18.91■□□□□ 0.62
CDX2Q99626 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CDX2Q99626 KRT18P41-201ENST00000518924 1277 ntBASIC18.91■□□□□ 0.62
CDX2Q99626 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.91■□□□□ 0.62
CDX2Q99626 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.91■□□□□ 0.62
CDX2Q99626 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 REXO1L3P-201ENST00000622202 1288 ntBASIC18.91■□□□□ 0.62
CDX2Q99626 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.91■□□□□ 0.62
CDX2Q99626 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX2Q99626 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
CDX2Q99626 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CDX2Q99626 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CDX2Q99626 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX2Q99626 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.9■□□□□ 0.62
CDX2Q99626 AC007967.3-201ENST00000434308 558 ntBASIC18.9■□□□□ 0.62
CDX2Q99626 AC112698.1-201ENST00000510299 916 ntBASIC18.9■□□□□ 0.62
CDX2Q99626 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.9■□□□□ 0.62
CDX2Q99626 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
CDX2Q99626 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.9■□□□□ 0.62
CDX2Q99626 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 MIR6799-201ENST00000620297 69 ntBASIC18.9■□□□□ 0.62
CDX2Q99626 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms