Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LINC00477Q96M19 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
LINC00477Q96M19 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 TSPY17P-201ENST00000450329 467 ntBASIC13.67□□□□□ -0.22
LINC00477Q96M19 FDX2-206ENST00000492239 773 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 AP005242.2-201ENST00000580065 1175 ntBASIC13.67□□□□□ -0.22
LINC00477Q96M19 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 AC020916.1-201ENST00000587762 1774 ntBASIC13.67□□□□□ -0.22
LINC00477Q96M19 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
LINC00477Q96M19 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LINC00477Q96M19 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 SDHAP2-201ENST00000455183 2001 ntBASIC13.66□□□□□ -0.22
LINC00477Q96M19 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 SLC25A1P2-201ENST00000430693 912 ntBASIC13.66□□□□□ -0.22
LINC00477Q96M19 KRT18P23-201ENST00000435622 1283 ntBASIC13.66□□□□□ -0.22
LINC00477Q96M19 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 AC233702.5-201ENST00000584107 538 ntBASIC13.66□□□□□ -0.22
LINC00477Q96M19 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 REXO1L10P-201ENST00000615707 1290 ntBASIC13.66□□□□□ -0.22
LINC00477Q96M19 REXO1L12P-201ENST00000622156 912 ntBASIC13.66□□□□□ -0.22
LINC00477Q96M19 AL049637.2-201ENST00000641778 930 ntBASIC13.66□□□□□ -0.22
LINC00477Q96M19 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 STK4-201ENST00000372801 2038 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC13.66□□□□□ -0.22
LINC00477Q96M19 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LINC00477Q96M19 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
LINC00477Q96M19 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LINC00477Q96M19 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms