Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CLIP3Q96DZ5 AL162741.1-201ENST00000565563 1558 ntBASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 HLA-F-220ENST00000434407 884 ntBASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 HEIH-201ENST00000623091 1652 ntBASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIP3Q96DZ5 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 AL357033.4-201ENST00000617703 1807 ntBASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 Z98044.1-201ENST00000632503 1764 ntBASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIP3Q96DZ5 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 AC099398.1-201ENST00000567919 2776 ntBASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 ATP5G2P1-201ENST00000433580 426 ntBASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 TSSC2-201ENST00000450217 709 ntBASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 AC009065.1-201ENST00000564055 1225 ntBASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms