Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SNRNP40Q96DI7 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SNRNP40Q96DI7 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SNRNP40Q96DI7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SNRNP40Q96DI7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 UPF3AP3-201ENST00000420996 769 ntBASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 OR7E14P-202ENST00000530490 1290 ntBASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 AC034105.1-201ENST00000563488 319 ntBASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 AL158211.5-201ENST00000623583 2518 ntBASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SNRNP40Q96DI7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 AC098831.1-202ENST00000438821 336 ntBASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 AL591424.1-201ENST00000442569 1213 ntBASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 AL356309.3-201ENST00000624132 1934 ntBASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 AC125634.1-201ENST00000438758 1403 ntBASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SNRNP40Q96DI7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SNRNP40Q96DI7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.21
SNRNP40Q96DI7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.33■□□□□ 0.21
SNRNP40Q96DI7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SNRNP40Q96DI7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 AC012640.2-201ENST00000561606 901 ntBASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 AC010327.4-202ENST00000591484 748 ntBASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 SDHAP2-201ENST00000455183 2001 ntBASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 AL032819.2-201ENST00000624543 2162 ntBASIC16.33■□□□□ 0.2
SNRNP40Q96DI7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms