Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATG4AQ8WYN0 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATG4AQ8WYN0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ATG4AQ8WYN0 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
ATG4AQ8WYN0 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.89■□□□□ 0.62
ATG4AQ8WYN0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.89■□□□□ 0.62
ATG4AQ8WYN0 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
ATG4AQ8WYN0 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 AL353719.1-201ENST00000566847 864 ntBASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 AC093010.1-201ENST00000473625 1624 ntBASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 AC106820.2-201ENST00000563775 3264 ntBASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATG4AQ8WYN0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 UNC93B2-201ENST00000285383 730 ntBASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SLC25A1P2-201ENST00000430693 912 ntBASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 AC139713.2-201ENST00000641328 2723 ntBASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 AC092338.2-201ENST00000568827 1415 ntBASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATG4AQ8WYN0 PP12613-201ENST00000424958 2230 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms