Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PKNOX1P55347 OR6D1P-202ENST00000641007 5290 ntBASIC17.89■□□□□ 0.45
PKNOX1P55347 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.89■□□□□ 0.45
PKNOX1P55347 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PKNOX1P55347 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PKNOX1P55347 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PKNOX1P55347 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.89■□□□□ 0.45
PKNOX1P55347 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PKNOX1P55347 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PKNOX1P55347 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 FLJ13224-201ENST00000313737 1514 ntBASIC17.88■□□□□ 0.45
PKNOX1P55347 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.88■□□□□ 0.45
PKNOX1P55347 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
PKNOX1P55347 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PKNOX1P55347 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 AL355355.2-201ENST00000442321 338 ntBASIC17.88■□□□□ 0.45
PKNOX1P55347 AL158047.1-201ENST00000445918 881 ntBASIC17.88■□□□□ 0.45
PKNOX1P55347 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.88■□□□□ 0.45
PKNOX1P55347 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.88■□□□□ 0.45
PKNOX1P55347 AP005242.2-201ENST00000580065 1175 ntBASIC17.88■□□□□ 0.45
PKNOX1P55347 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.88■□□□□ 0.45
PKNOX1P55347 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PKNOX1P55347 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.88■□□□□ 0.45
PKNOX1P55347 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PKNOX1P55347 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.87■□□□□ 0.45
PKNOX1P55347 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.87■□□□□ 0.45
PKNOX1P55347 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.87■□□□□ 0.45
PKNOX1P55347 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
PKNOX1P55347 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.87■□□□□ 0.45
PKNOX1P55347 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.87■□□□□ 0.45
PKNOX1P55347 REXO1L9P-201ENST00000604264 2108 ntBASIC17.87■□□□□ 0.45
PKNOX1P55347 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.87■□□□□ 0.45
PKNOX1P55347 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PKNOX1P55347 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.87■□□□□ 0.45
PKNOX1P55347 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.86■□□□□ 0.45
PKNOX1P55347 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PKNOX1P55347 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PKNOX1P55347 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.86■□□□□ 0.45
PKNOX1P55347 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PKNOX1P55347 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PKNOX1P55347 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PKNOX1P55347 HOXB1-202ENST00000577092 1414 ntBASIC17.86■□□□□ 0.45
PKNOX1P55347 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.86■□□□□ 0.45
PKNOX1P55347 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms