Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC23.94■■□□□ 1.42
COL18A1P39060 CIPC-205ENST00000555437 566 ntTSL 3 BASIC23.94■■□□□ 1.42
COL18A1P39060 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC23.94■■□□□ 1.42
COL18A1P39060 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC23.94■■□□□ 1.42
COL18A1P39060 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
COL18A1P39060 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL18A1P39060 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
COL18A1P39060 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL18A1P39060 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
COL18A1P39060 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC23.94■■□□□ 1.42
COL18A1P39060 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL18A1P39060 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 ELK2BP-201ENST00000415014 1224 ntBASIC23.93■■□□□ 1.42
COL18A1P39060 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
COL18A1P39060 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC23.93■■□□□ 1.42
COL18A1P39060 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 KRT18P2-201ENST00000447938 1258 ntBASIC23.93■■□□□ 1.42
COL18A1P39060 MSRA-206ENST00000521209 814 ntTSL 3 BASIC23.93■■□□□ 1.42
COL18A1P39060 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC23.93■■□□□ 1.42
COL18A1P39060 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC23.93■■□□□ 1.42
COL18A1P39060 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC23.93■■□□□ 1.42
COL18A1P39060 AC005082.1-201ENST00000413042 2259 ntBASIC23.93■■□□□ 1.42
COL18A1P39060 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC23.93■■□□□ 1.42
COL18A1P39060 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL18A1P39060 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC23.93■■□□□ 1.42
COL18A1P39060 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC23.93■■□□□ 1.42
COL18A1P39060 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL18A1P39060 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC23.93■■□□□ 1.42
COL18A1P39060 SRP19-202ENST00000445150 833 ntTSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC23.93■■□□□ 1.42
COL18A1P39060 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL18A1P39060 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
COL18A1P39060 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL18A1P39060 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC23.93■■□□□ 1.42
COL18A1P39060 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
COL18A1P39060 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL18A1P39060 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL18A1P39060 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL18A1P39060 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
COL18A1P39060 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL18A1P39060 MCCD1P2-201ENST00000423228 335 ntBASIC23.92■■□□□ 1.42
COL18A1P39060 AC122714.2-201ENST00000502787 707 ntBASIC23.92■■□□□ 1.42
COL18A1P39060 YBX1P5-201ENST00000509441 847 ntBASIC23.92■■□□□ 1.42
COL18A1P39060 PCDHAC2-203ENST00000615316 3011 ntBASIC23.92■■□□□ 1.42
COL18A1P39060 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL18A1P39060 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL18A1P39060 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL18A1P39060 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC23.92■■□□□ 1.42
COL18A1P39060 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC23.92■■□□□ 1.42
COL18A1P39060 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 AC148477.5-201ENST00000625164 1645 ntBASIC23.91■■□□□ 1.42
COL18A1P39060 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 ANO7L1-203ENST00000602586 1720 ntBASIC23.91■■□□□ 1.42
COL18A1P39060 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC23.91■■□□□ 1.42
COL18A1P39060 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC23.91■■□□□ 1.42
COL18A1P39060 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC23.91■■□□□ 1.42
COL18A1P39060 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC23.91■■□□□ 1.42
COL18A1P39060 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC23.91■■□□□ 1.42
COL18A1P39060 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC23.91■■□□□ 1.42
COL18A1P39060 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
COL18A1P39060 AC002310.6-201ENST00000624451 1377 ntBASIC23.91■■□□□ 1.42
COL18A1P39060 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC23.91■■□□□ 1.42
COL18A1P39060 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC23.91■■□□□ 1.42
COL18A1P39060 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.91■■□□□ 1.42
COL18A1P39060 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
COL18A1P39060 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC23.91■■□□□ 1.42
COL18A1P39060 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC23.91■■□□□ 1.42
COL18A1P39060 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
COL18A1P39060 AC006557.2-201ENST00000592985 1240 ntBASIC23.91■■□□□ 1.42
COL18A1P39060 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC23.91■■□□□ 1.42
COL18A1P39060 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL18A1P39060 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
COL18A1P39060 AFG3L1P-217ENST00000557444 2447 ntBASIC23.9■■□□□ 1.42
COL18A1P39060 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC23.9■■□□□ 1.42
COL18A1P39060 AC097374.2-201ENST00000618617 1306 ntBASIC23.9■■□□□ 1.42
COL18A1P39060 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC23.9■■□□□ 1.42
COL18A1P39060 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
COL18A1P39060 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC23.9■■□□□ 1.42
COL18A1P39060 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL18A1P39060 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms