Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.48■□□□□ 0.87
CIITAP33076 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.48■□□□□ 0.87
CIITAP33076 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
CIITAP33076 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CIITAP33076 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.48■□□□□ 0.87
CIITAP33076 AC092329.2-201ENST00000598402 547 ntBASIC20.48■□□□□ 0.87
CIITAP33076 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
CIITAP33076 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.48■□□□□ 0.87
CIITAP33076 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CIITAP33076 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
CIITAP33076 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 AL020996.1-203ENST00000536896 2307 ntBASIC20.48■□□□□ 0.87
CIITAP33076 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CIITAP33076 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.48■□□□□ 0.87
CIITAP33076 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CIITAP33076 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CIITAP33076 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.47■□□□□ 0.87
CIITAP33076 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CIITAP33076 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.46■□□□□ 0.87
CIITAP33076 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
CIITAP33076 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.46■□□□□ 0.87
CIITAP33076 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.46■□□□□ 0.87
CIITAP33076 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 AC246785.2-201ENST00000432512 513 ntBASIC20.46■□□□□ 0.87
CIITAP33076 HCG4P8-203ENST00000443049 980 ntBASIC20.46■□□□□ 0.87
CIITAP33076 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
CIITAP33076 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.46■□□□□ 0.87
CIITAP33076 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CIITAP33076 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.46■□□□□ 0.87
CIITAP33076 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 BICD1-207ENST00000551848 1962 ntBASIC20.46■□□□□ 0.87
CIITAP33076 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.46■□□□□ 0.87
CIITAP33076 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.46■□□□□ 0.87
CIITAP33076 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.46■□□□□ 0.87
CIITAP33076 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CIITAP33076 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CIITAP33076 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CIITAP33076 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
CIITAP33076 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CIITAP33076 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.45■□□□□ 0.86
CIITAP33076 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CIITAP33076 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.45■□□□□ 0.86
CIITAP33076 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CIITAP33076 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CIITAP33076 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.45■□□□□ 0.86
CIITAP33076 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.45■□□□□ 0.86
CIITAP33076 MTCL1P1-201ENST00000446207 792 ntBASIC20.45■□□□□ 0.86
CIITAP33076 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.45■□□□□ 0.86
CIITAP33076 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.45■□□□□ 0.86
CIITAP33076 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.45■□□□□ 0.86
CIITAP33076 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CIITAP33076 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.45■□□□□ 0.86
CIITAP33076 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.45■□□□□ 0.86
CIITAP33076 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CIITAP33076 AC233702.3-201ENST00000578656 1387 ntBASIC20.45■□□□□ 0.86
CIITAP33076 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CIITAP33076 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
CIITAP33076 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CIITAP33076 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms