Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A3P12111 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A3P12111 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A3P12111 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL6A3P12111 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A3P12111 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A3P12111 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A3P12111 AL353135.1-201ENST00000606729 504 ntBASIC18.89■□□□□ 0.61
COL6A3P12111 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
COL6A3P12111 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.89■□□□□ 0.61
COL6A3P12111 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A3P12111 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A3P12111 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A3P12111 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A3P12111 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A3P12111 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A3P12111 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.88■□□□□ 0.61
COL6A3P12111 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A3P12111 CNN2P2-201ENST00000443536 909 ntBASIC18.88■□□□□ 0.61
COL6A3P12111 CNN2P3-201ENST00000450201 906 ntBASIC18.88■□□□□ 0.61
COL6A3P12111 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.88■□□□□ 0.61
COL6A3P12111 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.88■□□□□ 0.61
COL6A3P12111 AC017083.2-201ENST00000608069 979 ntBASIC18.88■□□□□ 0.61
COL6A3P12111 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A3P12111 MIR6787-201ENST00000616675 61 ntBASIC18.88■□□□□ 0.61
COL6A3P12111 AL136317.3-201ENST00000618497 906 ntBASIC18.88■□□□□ 0.61
COL6A3P12111 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A3P12111 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A3P12111 SIGLEC16-201ENST00000599858 1437 ntBASIC18.88■□□□□ 0.61
COL6A3P12111 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A3P12111 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A3P12111 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.88■□□□□ 0.61
COL6A3P12111 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A3P12111 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A3P12111 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A3P12111 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.88■□□□□ 0.61
COL6A3P12111 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.87■□□□□ 0.61
COL6A3P12111 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.87■□□□□ 0.61
COL6A3P12111 PGM5P2-202ENST00000637225 1043 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 AC112907.3-201ENST00000577781 2400 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 FAM58DP-201ENST00000428076 619 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 KLF2P3-201ENST00000451977 1087 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 ACA64.2-201ENST00000459014 129 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 AC010654.1-201ENST00000615722 808 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 IGHV3-72-202ENST00000621503 303 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A3P12111 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A3P12111 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.87■□□□□ 0.61
COL6A3P12111 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL6A3P12111 TUBB3P1-201ENST00000405796 1332 ntBASIC18.87■□□□□ 0.61
COL6A3P12111 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A3P12111 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL6A3P12111 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A3P12111 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.86■□□□□ 0.61
COL6A3P12111 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A3P12111 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A3P12111 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
COL6A3P12111 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.86■□□□□ 0.61
COL6A3P12111 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A3P12111 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A3P12111 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL6A3P12111 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.86■□□□□ 0.61
COL6A3P12111 GPR182-203ENST00000622922 591 ntBASIC18.86■□□□□ 0.61
COL6A3P12111 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.86■□□□□ 0.61
COL6A3P12111 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.86■□□□□ 0.61
COL6A3P12111 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A3P12111 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.85■□□□□ 0.61
COL6A3P12111 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.85■□□□□ 0.61
COL6A3P12111 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
COL6A3P12111 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A3P12111 AC025580.3-201ENST00000617932 1424 ntBASIC18.85■□□□□ 0.61
COL6A3P12111 AC026310.3-201ENST00000625186 2373 ntBASIC18.85■□□□□ 0.61
COL6A3P12111 AL512408.1-201ENST00000569378 2000 ntBASIC18.85■□□□□ 0.61
COL6A3P12111 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A3P12111 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms