Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC11.31□□□□□ -0.6
APOBP04114 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC11.31□□□□□ -0.6
APOBP04114 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
APOBP04114 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 SOD2-201ENST00000337404 991 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 PRSS29P-201ENST00000440800 595 ntBASIC11.3□□□□□ -0.6
APOBP04114 UGT1A2P-201ENST00000454886 866 ntBASIC11.3□□□□□ -0.6
APOBP04114 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC11.3□□□□□ -0.6
APOBP04114 AC112698.1-201ENST00000510299 916 ntBASIC11.3□□□□□ -0.6
APOBP04114 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 C20orf181-201ENST00000623918 480 ntBASIC11.3□□□□□ -0.6
APOBP04114 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 LINC00602-201ENST00000629776 2065 ntBASIC11.3□□□□□ -0.6
APOBP04114 AL499627.1-201ENST00000569373 2188 ntBASIC11.3□□□□□ -0.6
APOBP04114 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 METTL26-205ENST00000397666 726 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.3□□□□□ -0.6
APOBP04114 ADH5P3-201ENST00000433842 1137 ntBASIC11.3□□□□□ -0.6
APOBP04114 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC11.3□□□□□ -0.6
APOBP04114 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC11.3□□□□□ -0.6
APOBP04114 AC011467.4-201ENST00000594891 528 ntBASIC11.3□□□□□ -0.6
APOBP04114 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 GPR89P-201ENST00000407924 1495 ntBASIC11.3□□□□□ -0.6
APOBP04114 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
APOBP04114 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC11.3□□□□□ -0.6
APOBP04114 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 GSAP-205ENST00000430584 600 ntTSL 5 BASIC11.3□□□□□ -0.6
APOBP04114 CEND1P1-201ENST00000451006 455 ntBASIC11.3□□□□□ -0.6
APOBP04114 AC093520.2-201ENST00000561830 333 ntBASIC11.3□□□□□ -0.6
APOBP04114 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 AL022326.1-202ENST00000641533 845 ntBASIC11.3□□□□□ -0.6
APOBP04114 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
APOBP04114 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC11.3□□□□□ -0.6
APOBP04114 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 AC148477.5-201ENST00000625164 1645 ntBASIC11.3□□□□□ -0.6
APOBP04114 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
APOBP04114 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 AC097374.2-201ENST00000618617 1306 ntBASIC11.3□□□□□ -0.6
APOBP04114 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
APOBP04114 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC11.3□□□□□ -0.6
APOBP04114 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 AC006557.2-201ENST00000592985 1240 ntBASIC11.3□□□□□ -0.6
APOBP04114 LINC00628-201ENST00000628516 1289 ntBASIC11.3□□□□□ -0.6
APOBP04114 AL513210.1-201ENST00000629608 234 ntBASIC11.3□□□□□ -0.6
APOBP04114 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC11.3□□□□□ -0.6
APOBP04114 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC11.29□□□□□ -0.6
APOBP04114 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC11.29□□□□□ -0.6
APOBP04114 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
APOBP04114 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC11.29□□□□□ -0.6
APOBP04114 KRT19P2-202ENST00000557173 1012 ntBASIC11.29□□□□□ -0.6
APOBP04114 RIN3-211ENST00000557762 517 ntTSL 3 BASIC11.29□□□□□ -0.6
APOBP04114 TCAP-202ENST00000578283 583 ntTSL 5 BASIC11.29□□□□□ -0.6
APOBP04114 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC11.29□□□□□ -0.6
APOBP04114 AD001527.2-201ENST00000622994 785 ntBASIC11.29□□□□□ -0.6
APOBP04114 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC11.29□□□□□ -0.6
APOBP04114 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC11.29□□□□□ -0.6
APOBP04114 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC11.29□□□□□ -0.6
APOBP04114 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 KRT8P47-201ENST00000604727 1398 ntBASIC11.29□□□□□ -0.6
APOBP04114 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC11.29□□□□□ -0.6
APOBP04114 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC11.29□□□□□ -0.6
APOBP04114 MTCL1P1-201ENST00000446207 792 ntBASIC11.29□□□□□ -0.6
APOBP04114 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
APOBP04114 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC11.29□□□□□ -0.6
APOBP04114 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC11.29□□□□□ -0.6
APOBP04114 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC11.29□□□□□ -0.6
APOBP04114 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
APOBP04114 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
APOBP04114 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC11.29□□□□□ -0.6
APOBP04114 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
APOBP04114 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms