Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.85■■□□□ 1.09
COL1A1P02452 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL1A1P02452 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL1A1P02452 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
COL1A1P02452 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL1A1P02452 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
COL1A1P02452 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.84■■□□□ 1.09
COL1A1P02452 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL1A1P02452 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.84■■□□□ 1.09
COL1A1P02452 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.84■■□□□ 1.09
COL1A1P02452 MIR5100-201ENST00000579544 119 ntBASIC21.84■■□□□ 1.09
COL1A1P02452 AC098818.2-201ENST00000564925 2320 ntBASIC21.84■■□□□ 1.09
COL1A1P02452 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.84■■□□□ 1.09
COL1A1P02452 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.84■■□□□ 1.09
COL1A1P02452 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL1A1P02452 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
COL1A1P02452 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
COL1A1P02452 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL1A1P02452 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL1A1P02452 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.84■■□□□ 1.09
COL1A1P02452 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL1A1P02452 INTS4P1-201ENST00000438455 1935 ntBASIC21.84■■□□□ 1.09
COL1A1P02452 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL1A1P02452 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL1A1P02452 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.83■■□□□ 1.09
COL1A1P02452 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.83■■□□□ 1.09
COL1A1P02452 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21.83■■□□□ 1.09
COL1A1P02452 AC112698.1-201ENST00000510299 916 ntBASIC21.83■■□□□ 1.09
COL1A1P02452 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.83■■□□□ 1.09
COL1A1P02452 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.83■■□□□ 1.09
COL1A1P02452 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 AC011467.2-201ENST00000598425 242 ntBASIC21.83■■□□□ 1.09
COL1A1P02452 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.83■■□□□ 1.09
COL1A1P02452 AC148477.8-201ENST00000624298 468 ntBASIC21.83■■□□□ 1.09
COL1A1P02452 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
COL1A1P02452 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL1A1P02452 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.83■■□□□ 1.09
COL1A1P02452 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.83■■□□□ 1.09
COL1A1P02452 AC243591.1-201ENST00000452967 1364 ntBASIC21.83■■□□□ 1.09
COL1A1P02452 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL1A1P02452 AC093503.3-201ENST00000624917 2352 ntBASIC21.83■■□□□ 1.09
COL1A1P02452 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.83■■□□□ 1.09
COL1A1P02452 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL1A1P02452 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL1A1P02452 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL1A1P02452 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.83■■□□□ 1.09
COL1A1P02452 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
COL1A1P02452 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.83■■□□□ 1.08
COL1A1P02452 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL1A1P02452 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.83■■□□□ 1.08
COL1A1P02452 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL1A1P02452 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
COL1A1P02452 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL1A1P02452 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.83■■□□□ 1.08
COL1A1P02452 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.83■■□□□ 1.08
COL1A1P02452 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC21.83■■□□□ 1.08
COL1A1P02452 THAP5-204ENST00000438865 868 ntTSL 2 BASIC21.83■■□□□ 1.08
COL1A1P02452 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC21.83■■□□□ 1.08
COL1A1P02452 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.83■■□□□ 1.08
COL1A1P02452 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.08
COL1A1P02452 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL1A1P02452 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
COL1A1P02452 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL1A1P02452 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL1A1P02452 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL1A1P02452 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL1A1P02452 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL1A1P02452 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL1A1P02452 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.82■■□□□ 1.08
COL1A1P02452 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.82■■□□□ 1.08
COL1A1P02452 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL1A1P02452 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.82■■□□□ 1.08
COL1A1P02452 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL1A1P02452 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL1A1P02452 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL1A1P02452 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
COL1A1P02452 AC106730.1-201ENST00000566722 1090 ntBASIC21.82■■□□□ 1.08
COL1A1P02452 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.82■■□□□ 1.08
COL1A1P02452 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.82■■□□□ 1.08
COL1A1P02452 AL591684.3-201ENST00000605187 298 ntBASIC21.82■■□□□ 1.08
COL1A1P02452 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL1A1P02452 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
COL1A1P02452 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.81■■□□□ 1.08
COL1A1P02452 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
COL1A1P02452 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.81■■□□□ 1.08
COL1A1P02452 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL1A1P02452 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.81■■□□□ 1.08
COL1A1P02452 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms