Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM13O60858 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM13O60858 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM13O60858 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.96■□□□□ 0.47
TRIM13O60858 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM13O60858 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM13O60858 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM13O60858 AC093010.1-201ENST00000473625 1624 ntBASIC17.96■□□□□ 0.47
TRIM13O60858 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TRIM13O60858 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.96■□□□□ 0.47
TRIM13O60858 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM13O60858 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
TRIM13O60858 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TRIM13O60858 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
TRIM13O60858 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.46
TRIM13O60858 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
TRIM13O60858 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM13O60858 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRIM13O60858 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TRIM13O60858 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM13O60858 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 FAM197Y1-201ENST00000421178 764 ntBASIC17.95■□□□□ 0.46
TRIM13O60858 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
TRIM13O60858 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 SLC25A1P4-201ENST00000567977 778 ntBASIC17.95■□□□□ 0.46
TRIM13O60858 DGCR10-201ENST00000609839 495 ntBASIC17.95■□□□□ 0.46
TRIM13O60858 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM13O60858 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM13O60858 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM13O60858 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
TRIM13O60858 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM13O60858 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
TRIM13O60858 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM13O60858 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRIM13O60858 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM13O60858 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.94■□□□□ 0.46
TRIM13O60858 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM13O60858 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.94■□□□□ 0.46
TRIM13O60858 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM13O60858 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM13O60858 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM13O60858 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM13O60858 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM13O60858 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
TRIM13O60858 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM13O60858 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRIM13O60858 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM13O60858 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM13O60858 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM13O60858 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM13O60858 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM13O60858 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM13O60858 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms