Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC010507.1-201ENST00000633895 436 ntBASIC14.05□□□□□ -0.16
COL6A5A8TX70 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A5A8TX70 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
COL6A5A8TX70 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
COL6A5A8TX70 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A5A8TX70 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A5A8TX70 AL163051.1-201ENST00000569214 1512 ntBASIC14.04□□□□□ -0.16
COL6A5A8TX70 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A5A8TX70 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A5A8TX70 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 BASP1P1-201ENST00000430708 665 ntBASIC14.04□□□□□ -0.16
COL6A5A8TX70 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 KRT18P41-201ENST00000518924 1277 ntBASIC14.04□□□□□ -0.16
COL6A5A8TX70 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A5A8TX70 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A5A8TX70 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A5A8TX70 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 MIR6805-201ENST00000615055 62 ntBASIC14.04□□□□□ -0.16
COL6A5A8TX70 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A5A8TX70 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A5A8TX70 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 CU639417.3-201ENST00000624240 1404 ntBASIC14.03□□□□□ -0.16
COL6A5A8TX70 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 MIR943-201ENST00000401286 94 ntBASIC14.03□□□□□ -0.16
COL6A5A8TX70 MIR1909-201ENST00000411312 80 ntBASIC14.03□□□□□ -0.16
COL6A5A8TX70 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 RHOQP3-201ENST00000437982 621 ntBASIC14.03□□□□□ -0.16
COL6A5A8TX70 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 ADH5P3-201ENST00000433842 1137 ntBASIC14.03□□□□□ -0.16
COL6A5A8TX70 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 MIR4751-201ENST00000578027 74 ntBASIC14.03□□□□□ -0.16
COL6A5A8TX70 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A5A8TX70 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
COL6A5A8TX70 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
COL6A5A8TX70 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A5A8TX70 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC14.02□□□□□ -0.16
COL6A5A8TX70 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
COL6A5A8TX70 COX5BP8-201ENST00000416911 349 ntBASIC14.02□□□□□ -0.16
COL6A5A8TX70 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A5A8TX70 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.02□□□□□ -0.16
COL6A5A8TX70 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.02□□□□□ -0.16
COL6A5A8TX70 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A5A8TX70 OR7E47P-204ENST00000575924 449 ntBASIC14.02□□□□□ -0.16
COL6A5A8TX70 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A5A8TX70 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A5A8TX70 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A5A8TX70 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
COL6A5A8TX70 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
COL6A5A8TX70 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A5A8TX70 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A5A8TX70 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A5A8TX70 AL512408.1-201ENST00000569378 2000 ntBASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms