Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 AL163051.1-201ENST00000569214 1512 ntBASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CPSF4LA6NMK7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 KRT18P23-201ENST00000435622 1283 ntBASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 RBM17P1-201ENST00000453646 1190 ntBASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 AC009102.3-201ENST00000623118 1491 ntBASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 SDHAP2-201ENST00000455183 2001 ntBASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.84■□□□□ 0.29
CPSF4LA6NMK7 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.29
CPSF4LA6NMK7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CPSF4LA6NMK7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 TSPY7P-201ENST00000431358 1114 ntBASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CPSF4LA6NMK7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 AP000997.3-201ENST00000623333 2250 ntBASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 GNAS-203ENST00000306120 1878 ntBASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 FLJ13224-201ENST00000313737 1514 ntBASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CPSF4LA6NMK7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms