Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PCDHB1Q9Y5F3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB1Q9Y5F3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB1Q9Y5F3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB1Q9Y5F3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 AL354751.1-201ENST00000412768 1863 ntBASIC18.24■□□□□ 0.51
PCDHB1Q9Y5F3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 HBZP1-201ENST00000354915 429 ntBASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 AL645929.1-201ENST00000420084 975 ntBASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 AC092597.1-201ENST00000487352 616 ntBASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 PRELID1P1-202ENST00000567272 903 ntBASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB1Q9Y5F3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 GMCL1P1-201ENST00000463439 1581 ntBASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 ABALON-201ENST00000629058 1903 ntBASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 MIR3652-201ENST00000579335 131 ntBASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 AL390961.4-201ENST00000623958 2535 ntBASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.22■□□□□ 0.51
PCDHB1Q9Y5F3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms