Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 GPALPP1-207ENST00000611650 899 ntBASIC20.36■□□□□ 0.85
VTA1Q9NP79 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VTA1Q9NP79 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.36■□□□□ 0.85
VTA1Q9NP79 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VTA1Q9NP79 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VTA1Q9NP79 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VTA1Q9NP79 MIR574-201ENST00000385209 96 ntBASIC20.35■□□□□ 0.85
VTA1Q9NP79 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 AC112698.1-201ENST00000510299 916 ntBASIC20.35■□□□□ 0.85
VTA1Q9NP79 SLC25A1P1-201ENST00000528351 927 ntBASIC20.35■□□□□ 0.85
VTA1Q9NP79 AC006538.3-201ENST00000612495 578 ntBASIC20.35■□□□□ 0.85
VTA1Q9NP79 MIR7706-201ENST00000613747 67 ntBASIC20.35■□□□□ 0.85
VTA1Q9NP79 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.35■□□□□ 0.85
VTA1Q9NP79 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VTA1Q9NP79 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 ANO7L1-203ENST00000602586 1720 ntBASIC20.35■□□□□ 0.85
VTA1Q9NP79 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VTA1Q9NP79 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VTA1Q9NP79 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 AC243591.1-201ENST00000452967 1364 ntBASIC20.34■□□□□ 0.85
VTA1Q9NP79 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.34■□□□□ 0.85
VTA1Q9NP79 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.34■□□□□ 0.85
VTA1Q9NP79 ABCD1P5-201ENST00000445663 754 ntBASIC20.34■□□□□ 0.85
VTA1Q9NP79 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.34■□□□□ 0.85
VTA1Q9NP79 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.34■□□□□ 0.85
VTA1Q9NP79 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.34■□□□□ 0.85
VTA1Q9NP79 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.34■□□□□ 0.85
VTA1Q9NP79 AC117500.6-201ENST00000624871 588 ntBASIC20.34■□□□□ 0.85
VTA1Q9NP79 FAM215A-202ENST00000632077 792 ntBASIC20.34■□□□□ 0.85
VTA1Q9NP79 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.34■□□□□ 0.85
VTA1Q9NP79 AP005117.1-201ENST00000584346 1413 ntBASIC20.34■□□□□ 0.85
VTA1Q9NP79 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VTA1Q9NP79 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 AC139887.3-201ENST00000568585 713 ntBASIC20.33■□□□□ 0.85
VTA1Q9NP79 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.33■□□□□ 0.85
VTA1Q9NP79 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VTA1Q9NP79 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.33■□□□□ 0.84
VTA1Q9NP79 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.84
VTA1Q9NP79 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VTA1Q9NP79 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms