Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.74
CCDC42Q96M95 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 AC012317.2-201ENST00000623305 2251 ntBASIC19.7■□□□□ 0.74
CCDC42Q96M95 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 AL163051.1-201ENST00000569214 1512 ntBASIC19.7■□□□□ 0.74
CCDC42Q96M95 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC42Q96M95 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC42Q96M95 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 AC009102.3-201ENST00000623118 1491 ntBASIC19.69■□□□□ 0.74
CCDC42Q96M95 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 MIR3180-5-201ENST00000583743 153 ntBASIC19.69■□□□□ 0.74
CCDC42Q96M95 CD177P1-201ENST00000606252 935 ntBASIC19.69■□□□□ 0.74
CCDC42Q96M95 DGCR10-201ENST00000609839 495 ntBASIC19.69■□□□□ 0.74
CCDC42Q96M95 FAM197Y4-202ENST00000622692 608 ntBASIC19.69■□□□□ 0.74
CCDC42Q96M95 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.69■□□□□ 0.74
CCDC42Q96M95 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC42Q96M95 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC42Q96M95 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 CA15P1-201ENST00000481698 905 ntBASIC19.68■□□□□ 0.74
CCDC42Q96M95 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC42Q96M95 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC42Q96M95 AL135905.2-201ENST00000584934 1404 ntBASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms