Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 BEX3-201ENST00000361298 921 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 AC254562.1-201ENST00000417586 456 ntBASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 AC002310.6-201ENST00000624451 1377 ntBASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 ANO7L1-203ENST00000602586 1720 ntBASIC22.25■■□□□ 1.15
CCDC88AQ3V6T2 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 MTDHP5-201ENST00000598980 586 ntBASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 AL356309.3-201ENST00000624132 1934 ntBASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 AC025062.2-201ENST00000605477 670 ntBASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC88AQ3V6T2 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC88AQ3V6T2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 ORC5-208ENST00000626700 344 ntTSL 3 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC88AQ3V6T2 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 UROS-202ENST00000368778 1556 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 PON3-203ENST00000427422 894 ntTSL 3 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 RNF151-202ENST00000569210 853 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 AC027612.4-201ENST00000605371 583 ntBASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms