Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC11.24□□□□□ -0.61
HSPG2P98160 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC11.24□□□□□ -0.61
HSPG2P98160 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 CD9-202ENST00000382515 1229 ntTSL 5 BASIC11.24□□□□□ -0.61
HSPG2P98160 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC11.24□□□□□ -0.61
HSPG2P98160 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC11.24□□□□□ -0.61
HSPG2P98160 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC11.24□□□□□ -0.61
HSPG2P98160 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC11.24□□□□□ -0.61
HSPG2P98160 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HSPG2P98160 IRX1P1-201ENST00000438849 1838 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC11.23□□□□□ -0.61
HSPG2P98160 MIR149-201ENST00000384879 89 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 RAC2-204ENST00000406508 893 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC11.23□□□□□ -0.61
HSPG2P98160 NAA50-208ENST00000497255 789 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 MRPS18AP1-201ENST00000414458 589 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 TSPY16P-201ENST00000449843 468 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC11.23□□□□□ -0.61
HSPG2P98160 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 MED29-202ENST00000594368 1471 ntTSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 PC-214ENST00000628663 1470 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 AL121761.2-201ENST00000598007 1648 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 AC004461.1-201ENST00000412461 403 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 MIR6799-201ENST00000620297 69 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HSPG2P98160 MED17-221ENST00000639724 2317 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 NME2P1-201ENST00000426182 414 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC11.23□□□□□ -0.61
HSPG2P98160 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC11.23□□□□□ -0.61
HSPG2P98160 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
HSPG2P98160 AC004449.1-201ENST00000564240 433 ntBASIC11.23□□□□□ -0.61
HSPG2P98160 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
HSPG2P98160 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HSPG2P98160 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 AC092667.1-201ENST00000434301 2586 ntBASIC11.22□□□□□ -0.61
HSPG2P98160 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC11.22□□□□□ -0.61
HSPG2P98160 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 AC020907.5-201ENST00000624372 1936 ntBASIC11.22□□□□□ -0.61
HSPG2P98160 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 AC007967.3-201ENST00000434308 558 ntBASIC11.22□□□□□ -0.61
HSPG2P98160 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 NFYC-AS1-201ENST00000606277 1687 ntBASIC11.22□□□□□ -0.61
HSPG2P98160 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC11.22□□□□□ -0.61
HSPG2P98160 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
HSPG2P98160 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC11.22□□□□□ -0.61
HSPG2P98160 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC11.22□□□□□ -0.61
HSPG2P98160 DAD1-205ENST00000543337 501 ntTSL 3 BASIC11.22□□□□□ -0.61
HSPG2P98160 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC11.22□□□□□ -0.61
HSPG2P98160 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC11.22□□□□□ -0.61
HSPG2P98160 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms