Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ABCA4P78363 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCA4P78363 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCA4P78363 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.68■□□□□ 0.1
ABCA4P78363 IGHV3-22-201ENST00000520721 359 ntBASIC15.68■□□□□ 0.1
ABCA4P78363 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCA4P78363 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCA4P78363 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.68■□□□□ 0.1
ABCA4P78363 AC139887.3-201ENST00000568585 713 ntBASIC15.68■□□□□ 0.1
ABCA4P78363 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.68■□□□□ 0.1
ABCA4P78363 AC005336.2-201ENST00000593183 939 ntBASIC15.68■□□□□ 0.1
ABCA4P78363 AL355877.3-201ENST00000622820 899 ntBASIC15.68■□□□□ 0.1
ABCA4P78363 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCA4P78363 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
ABCA4P78363 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCA4P78363 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 SART3-203ENST00000546611 1184 ntBASIC15.68■□□□□ 0.1
ABCA4P78363 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.68■□□□□ 0.1
ABCA4P78363 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
ABCA4P78363 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCA4P78363 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.67■□□□□ 0.1
ABCA4P78363 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
ABCA4P78363 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA4P78363 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA4P78363 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
ABCA4P78363 MIR940-201ENST00000401276 94 ntBASIC15.67■□□□□ 0.1
ABCA4P78363 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.67■□□□□ 0.1
ABCA4P78363 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.67■□□□□ 0.1
ABCA4P78363 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.67■□□□□ 0.1
ABCA4P78363 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 AC008608.2-201ENST00000606089 416 ntBASIC15.67■□□□□ 0.1
ABCA4P78363 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA4P78363 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.67■□□□□ 0.1
ABCA4P78363 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
ABCA4P78363 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
ABCA4P78363 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.67■□□□□ 0.1
ABCA4P78363 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA4P78363 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA4P78363 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
ABCA4P78363 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
ABCA4P78363 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.66■□□□□ 0.1
ABCA4P78363 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
ABCA4P78363 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 AL499627.1-201ENST00000569373 2188 ntBASIC15.66■□□□□ 0.1
ABCA4P78363 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC15.66■□□□□ 0.1
ABCA4P78363 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 PMS2P2-201ENST00000425039 1128 ntBASIC15.66■□□□□ 0.1
ABCA4P78363 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.66■□□□□ 0.1
ABCA4P78363 AC027796.2-201ENST00000575326 344 ntBASIC15.66■□□□□ 0.1
ABCA4P78363 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.66■□□□□ 0.1
ABCA4P78363 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 AP001160.2-201ENST00000596071 487 ntBASIC15.66■□□□□ 0.1
ABCA4P78363 AC114341.1-201ENST00000618070 349 ntBASIC15.66■□□□□ 0.1
ABCA4P78363 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.66■□□□□ 0.1
ABCA4P78363 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC15.66■□□□□ 0.1
ABCA4P78363 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.66■□□□□ 0.1
ABCA4P78363 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ABCA4P78363 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
ABCA4P78363 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
ABCA4P78363 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
ABCA4P78363 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC15.65■□□□□ 0.1
ABCA4P78363 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.65■□□□□ 0.1
ABCA4P78363 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.65■□□□□ 0.1
ABCA4P78363 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ABCA4P78363 AL138831.2-201ENST00000606564 490 ntBASIC15.65■□□□□ 0.1
ABCA4P78363 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ABCA4P78363 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms