Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.84■■□□□ 1.41
RIPK4P57078 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
RIPK4P57078 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 RN7SL606P-201ENST00000472779 293 ntBASIC23.84■■□□□ 1.41
RIPK4P57078 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.84■■□□□ 1.41
RIPK4P57078 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.84■■□□□ 1.41
RIPK4P57078 IGHV3-41-201ENST00000613121 348 ntBASIC23.84■■□□□ 1.41
RIPK4P57078 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC23.84■■□□□ 1.41
RIPK4P57078 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
RIPK4P57078 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
RIPK4P57078 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
RIPK4P57078 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RIPK4P57078 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
RIPK4P57078 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC23.83■■□□□ 1.41
RIPK4P57078 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC23.83■■□□□ 1.41
RIPK4P57078 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC23.83■■□□□ 1.41
RIPK4P57078 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC23.83■■□□□ 1.41
RIPK4P57078 AC090616.6-201ENST00000582640 721 ntBASIC23.83■■□□□ 1.41
RIPK4P57078 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.83■■□□□ 1.41
RIPK4P57078 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.83■■□□□ 1.41
RIPK4P57078 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
RIPK4P57078 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC23.83■■□□□ 1.41
RIPK4P57078 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC23.83■■□□□ 1.41
RIPK4P57078 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
RIPK4P57078 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.4
RIPK4P57078 KRT18P1-202ENST00000452408 1331 ntBASIC23.83■■□□□ 1.4
RIPK4P57078 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.4
RIPK4P57078 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC23.82■■□□□ 1.4
RIPK4P57078 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
RIPK4P57078 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC23.82■■□□□ 1.4
RIPK4P57078 AC124864.1-201ENST00000623408 392 ntBASIC23.82■■□□□ 1.4
RIPK4P57078 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
RIPK4P57078 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC23.82■■□□□ 1.4
RIPK4P57078 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC23.82■■□□□ 1.4
RIPK4P57078 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 AC132938.6-201ENST00000623828 1655 ntBASIC23.82■■□□□ 1.4
RIPK4P57078 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
RIPK4P57078 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC23.82■■□□□ 1.4
RIPK4P57078 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC23.82■■□□□ 1.4
RIPK4P57078 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RIPK4P57078 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
RIPK4P57078 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC23.81■■□□□ 1.4
RIPK4P57078 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC23.81■■□□□ 1.4
RIPK4P57078 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 KIRREL3-AS3-201ENST00000404882 831 ntBASIC23.81■■□□□ 1.4
RIPK4P57078 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC23.81■■□□□ 1.4
RIPK4P57078 HCG4P8-203ENST00000443049 980 ntBASIC23.81■■□□□ 1.4
RIPK4P57078 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.81■■□□□ 1.4
RIPK4P57078 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC23.81■■□□□ 1.4
RIPK4P57078 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC23.81■■□□□ 1.4
RIPK4P57078 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC23.81■■□□□ 1.4
RIPK4P57078 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC23.81■■□□□ 1.4
RIPK4P57078 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.81■■□□□ 1.4
RIPK4P57078 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RIPK4P57078 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RIPK4P57078 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
RIPK4P57078 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms