Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.83■□□□□ 0.6
COPAP53621 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 AL031598.1-201ENST00000561511 1773 ntBASIC18.83■□□□□ 0.6
COPAP53621 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 KRT8P32-201ENST00000512863 1461 ntBASIC18.83■□□□□ 0.6
COPAP53621 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.83■□□□□ 0.6
COPAP53621 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COPAP53621 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 AL391807.1-203ENST00000604392 2365 ntBASIC18.82■□□□□ 0.6
COPAP53621 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 AL162741.1-201ENST00000565563 1558 ntBASIC18.82■□□□□ 0.6
COPAP53621 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COPAP53621 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.82■□□□□ 0.6
COPAP53621 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
COPAP53621 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.82■□□□□ 0.6
COPAP53621 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.82■□□□□ 0.6
COPAP53621 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.82■□□□□ 0.6
COPAP53621 AL136038.4-201ENST00000603606 1261 ntBASIC18.82■□□□□ 0.6
COPAP53621 AC012313.10-201ENST00000623509 926 ntBASIC18.82■□□□□ 0.6
COPAP53621 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.82■□□□□ 0.6
COPAP53621 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.82■□□□□ 0.6
COPAP53621 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 KRT8P7-201ENST00000533003 1432 ntBASIC18.82■□□□□ 0.6
COPAP53621 HOXB1-202ENST00000577092 1414 ntBASIC18.82■□□□□ 0.6
COPAP53621 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COPAP53621 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 AC016734.2-201ENST00000624325 1377 ntBASIC18.81■□□□□ 0.6
COPAP53621 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.81■□□□□ 0.6
COPAP53621 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COPAP53621 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 TSSC2-201ENST00000450217 709 ntBASIC18.81■□□□□ 0.6
COPAP53621 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.81■□□□□ 0.6
COPAP53621 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.81■□□□□ 0.6
COPAP53621 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COPAP53621 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.81■□□□□ 0.6
COPAP53621 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COPAP53621 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COPAP53621 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COPAP53621 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
COPAP53621 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COPAP53621 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
COPAP53621 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.81■□□□□ 0.6
COPAP53621 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COPAP53621 Z98044.1-201ENST00000632503 1764 ntBASIC18.81■□□□□ 0.6
COPAP53621 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
COPAP53621 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.8■□□□□ 0.6
COPAP53621 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.8■□□□□ 0.6
COPAP53621 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
COPAP53621 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COPAP53621 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COPAP53621 MIR662-201ENST00000384847 95 ntBASIC18.8■□□□□ 0.6
COPAP53621 MIR564-202ENST00000385049 94 ntBASIC18.8■□□□□ 0.6
COPAP53621 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.8■□□□□ 0.6
COPAP53621 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.8■□□□□ 0.6
COPAP53621 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
COPAP53621 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.8■□□□□ 0.6
COPAP53621 AC104390.1-201ENST00000555663 520 ntBASIC18.8■□□□□ 0.6
COPAP53621 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.8■□□□□ 0.6
COPAP53621 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.8■□□□□ 0.6
COPAP53621 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.8■□□□□ 0.6
COPAP53621 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.8■□□□□ 0.6
COPAP53621 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COPAP53621 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms