Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.45■□□□□ 0.38
COL5A1P20908 GPX1P2-201ENST00000429271 606 ntBASIC17.45■□□□□ 0.38
COL5A1P20908 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.45■□□□□ 0.38
COL5A1P20908 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.45■□□□□ 0.38
COL5A1P20908 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.45■□□□□ 0.38
COL5A1P20908 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.45■□□□□ 0.38
COL5A1P20908 MTDHP4-201ENST00000600287 670 ntBASIC17.45■□□□□ 0.38
COL5A1P20908 AC083906.6-201ENST00000641366 219 ntBASIC17.45■□□□□ 0.38
COL5A1P20908 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.45■□□□□ 0.38
COL5A1P20908 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.44■□□□□ 0.38
COL5A1P20908 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A1P20908 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 AC107918.4-202ENST00000641623 219 ntBASIC17.44■□□□□ 0.38
COL5A1P20908 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
COL5A1P20908 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.44■□□□□ 0.38
COL5A1P20908 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
COL5A1P20908 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
COL5A1P20908 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.44■□□□□ 0.38
COL5A1P20908 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 AL691403.2-201ENST00000618460 490 ntBASIC17.44■□□□□ 0.38
COL5A1P20908 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.44■□□□□ 0.38
COL5A1P20908 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.44■□□□□ 0.38
COL5A1P20908 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL5A1P20908 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.43■□□□□ 0.38
COL5A1P20908 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
COL5A1P20908 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
COL5A1P20908 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL5A1P20908 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.43■□□□□ 0.38
COL5A1P20908 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.43■□□□□ 0.38
COL5A1P20908 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.43■□□□□ 0.38
COL5A1P20908 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.43■□□□□ 0.38
COL5A1P20908 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.43■□□□□ 0.38
COL5A1P20908 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
COL5A1P20908 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL5A1P20908 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
COL5A1P20908 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL5A1P20908 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.43■□□□□ 0.38
COL5A1P20908 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL5A1P20908 MYLKP1-201ENST00000509077 1580 ntBASIC17.42■□□□□ 0.38
COL5A1P20908 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A1P20908 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL5A1P20908 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL5A1P20908 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A1P20908 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.42■□□□□ 0.38
COL5A1P20908 DNAJB3-201ENST00000446806 729 ntBASIC17.42■□□□□ 0.38
COL5A1P20908 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.42■□□□□ 0.38
COL5A1P20908 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A1P20908 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
COL5A1P20908 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 AC022898.2-201ENST00000616822 1312 ntBASIC17.42■□□□□ 0.38
COL5A1P20908 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.42■□□□□ 0.38
COL5A1P20908 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A1P20908 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.42■□□□□ 0.38
COL5A1P20908 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 MIR940-201ENST00000401276 94 ntBASIC17.42■□□□□ 0.38
COL5A1P20908 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.42■□□□□ 0.38
COL5A1P20908 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.42■□□□□ 0.38
COL5A1P20908 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL5A1P20908 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 AP001160.2-201ENST00000596071 487 ntBASIC17.42■□□□□ 0.38
COL5A1P20908 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
COL5A1P20908 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms