Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL9A1P20849 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.73■□□□□ 0.59
COL9A1P20849 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.73■□□□□ 0.59
COL9A1P20849 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.73■□□□□ 0.59
COL9A1P20849 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
COL9A1P20849 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.73■□□□□ 0.59
COL9A1P20849 CEND1P1-201ENST00000451006 455 ntBASIC18.73■□□□□ 0.59
COL9A1P20849 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.73■□□□□ 0.59
COL9A1P20849 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.73■□□□□ 0.59
COL9A1P20849 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.73■□□□□ 0.59
COL9A1P20849 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.73■□□□□ 0.59
COL9A1P20849 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.73■□□□□ 0.59
COL9A1P20849 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
COL9A1P20849 FP475955.4-201ENST00000623131 1990 ntBASIC18.73■□□□□ 0.59
COL9A1P20849 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
COL9A1P20849 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL9A1P20849 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.72■□□□□ 0.59
COL9A1P20849 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL9A1P20849 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL9A1P20849 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.72■□□□□ 0.59
COL9A1P20849 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.72■□□□□ 0.59
COL9A1P20849 AC068587.9-201ENST00000641814 219 ntBASIC18.72■□□□□ 0.59
COL9A1P20849 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.72■□□□□ 0.59
COL9A1P20849 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.72■□□□□ 0.59
COL9A1P20849 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL9A1P20849 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL9A1P20849 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL9A1P20849 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL9A1P20849 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL9A1P20849 HEIH-201ENST00000623091 1652 ntBASIC18.71■□□□□ 0.59
COL9A1P20849 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL9A1P20849 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.71■□□□□ 0.59
COL9A1P20849 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL9A1P20849 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.71■□□□□ 0.59
COL9A1P20849 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL9A1P20849 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.71■□□□□ 0.59
COL9A1P20849 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 AC008735.5-201ENST00000623544 497 ntBASIC18.71■□□□□ 0.59
COL9A1P20849 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL9A1P20849 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.7■□□□□ 0.58
COL9A1P20849 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.7■□□□□ 0.58
COL9A1P20849 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL9A1P20849 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.7■□□□□ 0.58
COL9A1P20849 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL9A1P20849 AC236430.1-201ENST00000402231 743 ntBASIC18.7■□□□□ 0.58
COL9A1P20849 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.7■□□□□ 0.58
COL9A1P20849 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.7■□□□□ 0.58
COL9A1P20849 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.7■□□□□ 0.58
COL9A1P20849 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.7■□□□□ 0.58
COL9A1P20849 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.7■□□□□ 0.58
COL9A1P20849 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.7■□□□□ 0.58
COL9A1P20849 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.7■□□□□ 0.58
COL9A1P20849 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 AL513190.1-201ENST00000621254 727 ntBASIC18.7■□□□□ 0.58
COL9A1P20849 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 ELL2P1-201ENST00000413990 1906 ntBASIC18.7■□□□□ 0.58
COL9A1P20849 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL9A1P20849 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.7■□□□□ 0.58
COL9A1P20849 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.69■□□□□ 0.58
COL9A1P20849 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms