Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A3P12111 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A3P12111 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.92■□□□□ 0.62
COL6A3P12111 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A3P12111 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 ZNF815P-204ENST00000434898 1737 ntBASIC18.92■□□□□ 0.62
COL6A3P12111 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A3P12111 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.92■□□□□ 0.62
COL6A3P12111 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.92■□□□□ 0.62
COL6A3P12111 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A3P12111 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
COL6A3P12111 BCYRN1-201ENST00000418539 200 ntBASIC18.91■□□□□ 0.62
COL6A3P12111 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A3P12111 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL6A3P12111 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL6A3P12111 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A3P12111 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.91■□□□□ 0.62
COL6A3P12111 CRYGEP-201ENST00000412192 528 ntBASIC18.91■□□□□ 0.62
COL6A3P12111 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A3P12111 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.91■□□□□ 0.62
COL6A3P12111 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.91■□□□□ 0.62
COL6A3P12111 MIR4751-201ENST00000578027 74 ntBASIC18.91■□□□□ 0.62
COL6A3P12111 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.91■□□□□ 0.62
COL6A3P12111 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL6A3P12111 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.91■□□□□ 0.62
COL6A3P12111 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 PIN1P1-201ENST00000412108 996 ntBASIC18.91■□□□□ 0.62
COL6A3P12111 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A3P12111 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.9■□□□□ 0.62
COL6A3P12111 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL6A3P12111 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A3P12111 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A3P12111 AC113404.2-201ENST00000507884 177 ntBASIC18.9■□□□□ 0.62
COL6A3P12111 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.9■□□□□ 0.62
COL6A3P12111 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A3P12111 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 AC010507.1-201ENST00000633895 436 ntBASIC18.9■□□□□ 0.62
COL6A3P12111 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A3P12111 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A3P12111 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL6A3P12111 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A3P12111 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A3P12111 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A3P12111 FAM58CP-201ENST00000435741 640 ntBASIC18.89■□□□□ 0.62
COL6A3P12111 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A3P12111 RHOQP3-201ENST00000437982 621 ntBASIC18.89■□□□□ 0.62
COL6A3P12111 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.89■□□□□ 0.62
COL6A3P12111 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.89■□□□□ 0.62
COL6A3P12111 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.89■□□□□ 0.62
COL6A3P12111 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL6A3P12111 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL6A3P12111 BCAR1-209ENST00000546196 1340 ntBASIC18.89■□□□□ 0.61
COL6A3P12111 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A3P12111 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.89■□□□□ 0.61
COL6A3P12111 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms