Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GMCL1P1-201ENST00000463439 1581 ntBASIC17.79■□□□□ 0.44
TNFP01375 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
TNFP01375 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.79■□□□□ 0.44
TNFP01375 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.79■□□□□ 0.44
TNFP01375 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.79■□□□□ 0.44
TNFP01375 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.79■□□□□ 0.44
TNFP01375 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.79■□□□□ 0.44
TNFP01375 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TNFP01375 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.79■□□□□ 0.44
TNFP01375 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.79■□□□□ 0.44
TNFP01375 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 LINC00602-201ENST00000629776 2065 ntBASIC17.79■□□□□ 0.44
TNFP01375 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TNFP01375 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.78■□□□□ 0.44
TNFP01375 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TNFP01375 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
TNFP01375 NUS1P2-201ENST00000417358 873 ntBASIC17.78■□□□□ 0.44
TNFP01375 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.78■□□□□ 0.44
TNFP01375 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.78■□□□□ 0.44
TNFP01375 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.78■□□□□ 0.44
TNFP01375 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 AL031598.1-201ENST00000561511 1773 ntBASIC17.78■□□□□ 0.44
TNFP01375 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
TNFP01375 AC005082.1-201ENST00000413042 2259 ntBASIC17.78■□□□□ 0.44
TNFP01375 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TNFP01375 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
TNFP01375 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
TNFP01375 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TNFP01375 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TNFP01375 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.77■□□□□ 0.44
TNFP01375 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.77■□□□□ 0.44
TNFP01375 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
TNFP01375 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.77■□□□□ 0.44
TNFP01375 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.77■□□□□ 0.44
TNFP01375 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.77■□□□□ 0.44
TNFP01375 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TNFP01375 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
TNFP01375 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.77■□□□□ 0.44
TNFP01375 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TNFP01375 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.77■□□□□ 0.43
TNFP01375 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
TNFP01375 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TNFP01375 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.76■□□□□ 0.43
TNFP01375 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.76■□□□□ 0.43
TNFP01375 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.76■□□□□ 0.43
TNFP01375 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TNFP01375 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
TNFP01375 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
TNFP01375 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TNFP01375 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.76■□□□□ 0.43
TNFP01375 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TNFP01375 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
TNFP01375 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TNFP01375 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TNFP01375 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TNFP01375 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TNFP01375 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TNFP01375 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.76■□□□□ 0.43
TNFP01375 MTCL1P1-201ENST00000446207 792 ntBASIC17.76■□□□□ 0.43
TNFP01375 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms