Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.28■□□□□ 0.52
PDGFBP01127 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFBP01127 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PDGFBP01127 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PDGFBP01127 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PDGFBP01127 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 GPR89P-201ENST00000407924 1495 ntBASIC18.27■□□□□ 0.52
PDGFBP01127 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.27■□□□□ 0.52
PDGFBP01127 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.27■□□□□ 0.52
PDGFBP01127 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.27■□□□□ 0.52
PDGFBP01127 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 MIR149-201ENST00000384879 89 ntBASIC18.27■□□□□ 0.52
PDGFBP01127 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.27■□□□□ 0.52
PDGFBP01127 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.27■□□□□ 0.52
PDGFBP01127 TSEN15P1-201ENST00000423257 515 ntBASIC18.27■□□□□ 0.52
PDGFBP01127 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.27■□□□□ 0.52
PDGFBP01127 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.27■□□□□ 0.52
PDGFBP01127 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.27■□□□□ 0.52
PDGFBP01127 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.27■□□□□ 0.52
PDGFBP01127 AL031432.2-201ENST00000566714 459 ntBASIC18.27■□□□□ 0.52
PDGFBP01127 AL928711.1-201ENST00000570165 459 ntBASIC18.27■□□□□ 0.52
PDGFBP01127 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.27■□□□□ 0.52
PDGFBP01127 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
PDGFBP01127 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.27■□□□□ 0.52
PDGFBP01127 PGM5P2-202ENST00000637225 1043 ntBASIC18.27■□□□□ 0.52
PDGFBP01127 AL022326.1-202ENST00000641533 845 ntBASIC18.27■□□□□ 0.52
PDGFBP01127 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PDGFBP01127 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PDGFBP01127 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PDGFBP01127 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PDGFBP01127 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PDGFBP01127 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
PDGFBP01127 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.27■□□□□ 0.51
PDGFBP01127 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
PDGFBP01127 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.26■□□□□ 0.51
PDGFBP01127 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.26■□□□□ 0.51
PDGFBP01127 MKNK2P1-201ENST00000437526 628 ntBASIC18.26■□□□□ 0.51
PDGFBP01127 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 AC136632.2-201ENST00000512891 861 ntBASIC18.26■□□□□ 0.51
PDGFBP01127 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.26■□□□□ 0.51
PDGFBP01127 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 AC006557.2-201ENST00000592985 1240 ntBASIC18.26■□□□□ 0.51
PDGFBP01127 AC008687.5-201ENST00000593746 558 ntBASIC18.26■□□□□ 0.51
PDGFBP01127 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.26■□□□□ 0.51
PDGFBP01127 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PDGFBP01127 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.26■□□□□ 0.51
PDGFBP01127 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDGFBP01127 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PDGFBP01127 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
PDGFBP01127 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.25■□□□□ 0.51
PDGFBP01127 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PDGFBP01127 AC079776.2-201ENST00000641154 1609 ntBASIC18.25■□□□□ 0.51
PDGFBP01127 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 CRYGEP-201ENST00000412192 528 ntBASIC18.25■□□□□ 0.51
PDGFBP01127 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.25■□□□□ 0.51
PDGFBP01127 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.25■□□□□ 0.51
PDGFBP01127 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.25■□□□□ 0.51
PDGFBP01127 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PDGFBP01127 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.25■□□□□ 0.51
PDGFBP01127 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.25■□□□□ 0.51
PDGFBP01127 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PDGFBP01127 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PDGFBP01127 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.25■□□□□ 0.51
PDGFBP01127 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PDGFBP01127 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.25■□□□□ 0.51
PDGFBP01127 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.25■□□□□ 0.51
PDGFBP01127 AC007375.3-201ENST00000600936 2314 ntBASIC18.24■□□□□ 0.51
PDGFBP01127 AL024508.2-201ENST00000607749 1894 ntBASIC18.24■□□□□ 0.51
PDGFBP01127 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PDGFBP01127 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms