Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17■□□□□ 0.31
HMGN4O00479 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17■□□□□ 0.31
HMGN4O00479 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HMGN4O00479 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17■□□□□ 0.31
HMGN4O00479 FAM87A-204ENST00000613235 858 ntBASIC17■□□□□ 0.31
HMGN4O00479 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17■□□□□ 0.31
HMGN4O00479 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17■□□□□ 0.31
HMGN4O00479 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17■□□□□ 0.31
HMGN4O00479 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGN4O00479 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.99■□□□□ 0.31
HMGN4O00479 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 LINC00896-202ENST00000609602 2128 ntBASIC16.99■□□□□ 0.31
HMGN4O00479 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGN4O00479 SEC1P-202ENST00000473944 940 ntBASIC16.99■□□□□ 0.31
HMGN4O00479 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HMGN4O00479 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGN4O00479 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGN4O00479 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGN4O00479 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGN4O00479 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HMGN4O00479 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
HMGN4O00479 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HMGN4O00479 AC009947.2-201ENST00000444014 672 ntBASIC16.98■□□□□ 0.31
HMGN4O00479 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGN4O00479 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGN4O00479 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.98■□□□□ 0.31
HMGN4O00479 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.98■□□□□ 0.31
HMGN4O00479 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.98■□□□□ 0.31
HMGN4O00479 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.98■□□□□ 0.31
HMGN4O00479 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HMGN4O00479 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HMGN4O00479 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
HMGN4O00479 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGN4O00479 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HMGN4O00479 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGN4O00479 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGN4O00479 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HMGN4O00479 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms