Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 AC097658.1-201ENST00000475555 843 ntBASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 AL121832.2-201ENST00000610979 668 ntBASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 AC022211.2-201ENST00000585075 2527 ntBASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 NKILA-202ENST00000614771 2598 ntBASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.23■□□□□ 0.51
USH1CQ9Y6N9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 CROCCP5-201ENST00000436658 830 ntBASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 AC083906.2-201ENST00000511578 360 ntBASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
USH1CQ9Y6N9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 AL357033.4-201ENST00000617703 1807 ntBASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 AL023806.1-201ENST00000603994 1649 ntBASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 AC092437.1-201ENST00000624794 1048 ntBASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 PKD1P5-201ENST00000532415 10291 ntBASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.21■□□□□ 0.51
USH1CQ9Y6N9 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
USH1CQ9Y6N9 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms