Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 AC097488.1-201ENST00000507834 756 ntBASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 AC068587.9-201ENST00000641814 219 ntBASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC39Q9UFE4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 MFAP1P1-201ENST00000442257 1255 ntBASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC39Q9UFE4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC39Q9UFE4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 AP003071.4-201ENST00000562276 1284 ntBASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC39Q9UFE4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC39Q9UFE4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC39Q9UFE4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.14■□□□□ 0.98
CCDC39Q9UFE4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms