Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 AP001269.4-201ENST00000609611 512 ntBASIC21.5■■□□□ 1.03
DDX4Q9NQI0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 AL031598.1-201ENST00000561511 1773 ntBASIC21.5■■□□□ 1.03
DDX4Q9NQI0 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 AC126763.1-201ENST00000552015 2118 ntBASIC21.5■■□□□ 1.03
DDX4Q9NQI0 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX4Q9NQI0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 KRT18P65-201ENST00000439811 1286 ntBASIC21.49■■□□□ 1.03
DDX4Q9NQI0 FGFR3P6-201ENST00000457012 610 ntBASIC21.49■■□□□ 1.03
DDX4Q9NQI0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 AC120114.3-201ENST00000611923 658 ntBASIC21.49■■□□□ 1.03
DDX4Q9NQI0 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 AC132938.6-201ENST00000623828 1655 ntBASIC21.49■■□□□ 1.03
DDX4Q9NQI0 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX4Q9NQI0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 AL590627.1-203ENST00000421194 1026 ntBASIC21.48■■□□□ 1.03
DDX4Q9NQI0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 KRT18P67-201ENST00000432816 1264 ntBASIC21.48■■□□□ 1.03
DDX4Q9NQI0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 AC011467.2-201ENST00000598425 242 ntBASIC21.48■■□□□ 1.03
DDX4Q9NQI0 BX640515.1-201ENST00000617215 977 ntBASIC21.48■■□□□ 1.03
DDX4Q9NQI0 AL773604.1-201ENST00000617417 272 ntBASIC21.48■■□□□ 1.03
DDX4Q9NQI0 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX4Q9NQI0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 MED22-202ENST00000371999 987 ntTSL 3 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 AC009533.2-201ENST00000543664 586 ntBASIC21.47■■□□□ 1.03
DDX4Q9NQI0 AP001005.1-201ENST00000571755 1248 ntBASIC21.47■■□□□ 1.03
DDX4Q9NQI0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 AL049840.3-201ENST00000602669 611 ntBASIC21.47■■□□□ 1.03
DDX4Q9NQI0 AL355877.3-201ENST00000622820 899 ntBASIC21.47■■□□□ 1.03
DDX4Q9NQI0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX4Q9NQI0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX4Q9NQI0 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX4Q9NQI0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX4Q9NQI0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.46■■□□□ 1.03
DDX4Q9NQI0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX4Q9NQI0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms