Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 INTS4P1-201ENST00000438455 1935 ntBASIC19.73■□□□□ 0.75
LRCH3Q96II8 AC099778.1-201ENST00000568593 1911 ntBASIC19.73■□□□□ 0.75
LRCH3Q96II8 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 AL139400.1-201ENST00000366220 510 ntBASIC19.73■□□□□ 0.75
LRCH3Q96II8 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 AC069262.1-201ENST00000539058 672 ntBASIC19.73■□□□□ 0.75
LRCH3Q96II8 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 C20orf181-201ENST00000623918 480 ntBASIC19.73■□□□□ 0.75
LRCH3Q96II8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRCH3Q96II8 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.73■□□□□ 0.75
LRCH3Q96II8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.72■□□□□ 0.75
LRCH3Q96II8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRCH3Q96II8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRCH3Q96II8 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 CEND1P1-201ENST00000451006 455 ntBASIC19.72■□□□□ 0.75
LRCH3Q96II8 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRCH3Q96II8 AC005498.2-205ENST00000593218 784 ntBASIC19.72■□□□□ 0.75
LRCH3Q96II8 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRCH3Q96II8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LRCH3Q96II8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.72■□□□□ 0.75
LRCH3Q96II8 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LRCH3Q96II8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 AC112777.1-201ENST00000540175 1423 ntBASIC19.71■□□□□ 0.75
LRCH3Q96II8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 AC022494.1-201ENST00000466044 728 ntBASIC19.71■□□□□ 0.75
LRCH3Q96II8 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 KRT89P-201ENST00000620027 1478 ntBASIC19.71■□□□□ 0.75
LRCH3Q96II8 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.71■□□□□ 0.75
LRCH3Q96II8 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LRCH3Q96II8 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 AC245100.3-201ENST00000441281 285 ntBASIC19.7■□□□□ 0.74
LRCH3Q96II8 ABCD1P5-201ENST00000445663 754 ntBASIC19.7■□□□□ 0.74
LRCH3Q96II8 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 MTDHP4-201ENST00000600287 670 ntBASIC19.7■□□□□ 0.74
LRCH3Q96II8 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 AL109659.2-201ENST00000606809 1674 ntBASIC19.7■□□□□ 0.74
LRCH3Q96II8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LRCH3Q96II8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.7■□□□□ 0.74
LRCH3Q96II8 ELL2P1-201ENST00000413990 1906 ntBASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms