Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 AL645929.1-201ENST00000420084 975 ntBASIC16.4■□□□□ 0.22
CPNE4Q96A23 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 AC091076.1-201ENST00000610741 619 ntBASIC16.4■□□□□ 0.22
CPNE4Q96A23 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 KRT89P-201ENST00000620027 1478 ntBASIC16.4■□□□□ 0.22
CPNE4Q96A23 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.4■□□□□ 0.22
CPNE4Q96A23 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPNE4Q96A23 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.22
CPNE4Q96A23 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 MIR662-201ENST00000384847 95 ntBASIC16.39■□□□□ 0.21
CPNE4Q96A23 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 FAM86EP-206ENST00000510506 987 ntBASIC16.39■□□□□ 0.21
CPNE4Q96A23 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 AC024563.2-201ENST00000603282 481 ntBASIC16.39■□□□□ 0.21
CPNE4Q96A23 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CPNE4Q96A23 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CPNE4Q96A23 AC005332.1-201ENST00000577698 1310 ntBASIC16.39■□□□□ 0.21
CPNE4Q96A23 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 WIZP1-201ENST00000531444 2299 ntBASIC16.38■□□□□ 0.21
CPNE4Q96A23 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 PCED1CP-201ENST00000419887 785 ntBASIC16.38■□□□□ 0.21
CPNE4Q96A23 KRT18P48-201ENST00000434763 852 ntBASIC16.38■□□□□ 0.21
CPNE4Q96A23 SPDYE13P-201ENST00000445314 798 ntBASIC16.38■□□□□ 0.21
CPNE4Q96A23 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
CPNE4Q96A23 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CPNE4Q96A23 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms