Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 AC096582.2-201ENST00000510860 516 ntBASIC17.79■□□□□ 0.44
LMX1AQ8TE12 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 AL591684.3-201ENST00000605187 298 ntBASIC17.79■□□□□ 0.44
LMX1AQ8TE12 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 SAPCD2P3-201ENST00000455031 850 ntBASIC17.78■□□□□ 0.44
LMX1AQ8TE12 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 BNIP3P18-201ENST00000593976 575 ntBASIC17.78■□□□□ 0.44
LMX1AQ8TE12 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.78■□□□□ 0.44
LMX1AQ8TE12 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1AQ8TE12 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 AP000347.1-202ENST00000435868 847 ntBASIC17.77■□□□□ 0.44
LMX1AQ8TE12 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 REXO1L6P-202ENST00000619970 1078 ntBASIC17.77■□□□□ 0.44
LMX1AQ8TE12 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LMX1AQ8TE12 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.77■□□□□ 0.43
LMX1AQ8TE12 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LMX1AQ8TE12 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.77■□□□□ 0.43
LMX1AQ8TE12 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.76■□□□□ 0.43
LMX1AQ8TE12 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 MRPL3P1-201ENST00000400109 1033 ntBASIC17.76■□□□□ 0.43
LMX1AQ8TE12 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1AQ8TE12 AF238378.1-201ENST00000526806 358 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms