Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 AC008687.5-201ENST00000593746 558 ntBASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 AJ011932.1-201ENST00000621707 465 ntBASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 GPR89P-201ENST00000407924 1495 ntBASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SMC1BQ8NDV3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 RNA5SP421-201ENST00000516864 134 ntBASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 AC018845.2-201ENST00000568326 409 ntBASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SMC1BQ8NDV3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 AC025678.2-201ENST00000562061 970 ntBASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 AL008721.1-201ENST00000609964 604 ntBASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC1BQ8NDV3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMC1BQ8NDV3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
SMC1BQ8NDV3 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 PMS2P4-201ENST00000412466 1052 ntBASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC1BQ8NDV3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms