Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 RNPS1P1-201ENST00000507437 918 ntBASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 AL049840.3-201ENST00000602669 611 ntBASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 AC139530.3-201ENST00000620344 690 ntBASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 AL049812.1-201ENST00000432563 2267 ntBASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPAS3Q8IXF0 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 RBM17P3-201ENST00000417687 1192 ntBASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 KRT18P58-201ENST00000527480 1120 ntBASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 AC116562.4-201ENST00000641316 2276 ntBASIC18.88■□□□□ 0.61
NPAS3Q8IXF0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 KRT18P13-201ENST00000400056 1290 ntBASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 MYLKP1-201ENST00000509077 1580 ntBASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 AC073648.2-201ENST00000510116 352 ntBASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 AP001269.4-201ENST00000609611 512 ntBASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.87■□□□□ 0.61
NPAS3Q8IXF0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 AC106730.1-201ENST00000566722 1090 ntBASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 MTDHP3-201ENST00000594186 672 ntBASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 AC009154.2-201ENST00000621177 724 ntBASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 FAM215A-202ENST00000632077 792 ntBASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPAS3Q8IXF0 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPAS3Q8IXF0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NPAS3Q8IXF0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
NPAS3Q8IXF0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPAS3Q8IXF0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms