Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AP003041.3-201ENST00000527151 707 ntBASIC21.14■□□□□ 0.97
SF3A1Q15459 FITM1-202ENST00000559294 800 ntBASIC21.14■□□□□ 0.97
SF3A1Q15459 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.14■□□□□ 0.97
SF3A1Q15459 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
SF3A1Q15459 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SF3A1Q15459 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
SF3A1Q15459 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.13■□□□□ 0.97
SF3A1Q15459 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.13■□□□□ 0.97
SF3A1Q15459 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 AP000593.1-201ENST00000393668 712 ntBASIC21.13■□□□□ 0.97
SF3A1Q15459 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.13■□□□□ 0.97
SF3A1Q15459 AL355075.4-201ENST00000554988 638 ntBASIC21.13■□□□□ 0.97
SF3A1Q15459 AL353719.1-201ENST00000566847 864 ntBASIC21.13■□□□□ 0.97
SF3A1Q15459 AP006294.2-201ENST00000641667 209 ntBASIC21.13■□□□□ 0.97
SF3A1Q15459 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.13■□□□□ 0.97
SF3A1Q15459 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SF3A1Q15459 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.13■□□□□ 0.97
SF3A1Q15459 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
SF3A1Q15459 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.13■□□□□ 0.97
SF3A1Q15459 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SF3A1Q15459 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.12■□□□□ 0.97
SF3A1Q15459 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SF3A1Q15459 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.12■□□□□ 0.97
SF3A1Q15459 SLC25A1P2-201ENST00000430693 912 ntBASIC21.12■□□□□ 0.97
SF3A1Q15459 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.12■□□□□ 0.97
SF3A1Q15459 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.12■□□□□ 0.97
SF3A1Q15459 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.12■□□□□ 0.97
SF3A1Q15459 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SF3A1Q15459 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.12■□□□□ 0.97
SF3A1Q15459 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SF3A1Q15459 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.12■□□□□ 0.97
SF3A1Q15459 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SF3A1Q15459 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SF3A1Q15459 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SF3A1Q15459 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SF3A1Q15459 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.11■□□□□ 0.97
SF3A1Q15459 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SF3A1Q15459 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
SF3A1Q15459 MIR1238-201ENST00000408483 83 ntBASIC21.11■□□□□ 0.97
SF3A1Q15459 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
SF3A1Q15459 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.11■□□□□ 0.97
SF3A1Q15459 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.11■□□□□ 0.97
SF3A1Q15459 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.11■□□□□ 0.97
SF3A1Q15459 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.11■□□□□ 0.97
SF3A1Q15459 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.11■□□□□ 0.97
SF3A1Q15459 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SF3A1Q15459 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.11■□□□□ 0.97
SF3A1Q15459 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
SF3A1Q15459 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SF3A1Q15459 AC092338.2-201ENST00000568827 1415 ntBASIC21.11■□□□□ 0.97
SF3A1Q15459 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.11■□□□□ 0.97
SF3A1Q15459 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SF3A1Q15459 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SF3A1Q15459 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.1■□□□□ 0.97
SF3A1Q15459 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.1■□□□□ 0.97
SF3A1Q15459 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.1■□□□□ 0.97
SF3A1Q15459 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC21.1■□□□□ 0.97
SF3A1Q15459 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.1■□□□□ 0.97
SF3A1Q15459 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SF3A1Q15459 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms