Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.48■□□□□ 0.87
HTTP42858 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.48■□□□□ 0.87
HTTP42858 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
HTTP42858 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.48■□□□□ 0.87
HTTP42858 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
HTTP42858 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.47■□□□□ 0.87
HTTP42858 PRSS29P-201ENST00000440800 595 ntBASIC20.47■□□□□ 0.87
HTTP42858 KRT18P41-201ENST00000518924 1277 ntBASIC20.47■□□□□ 0.87
HTTP42858 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.47■□□□□ 0.87
HTTP42858 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.47■□□□□ 0.87
HTTP42858 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC20.47■□□□□ 0.87
HTTP42858 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
HTTP42858 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.47■□□□□ 0.87
HTTP42858 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
HTTP42858 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HTTP42858 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.47■□□□□ 0.87
HTTP42858 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
HTTP42858 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.46■□□□□ 0.87
HTTP42858 AL024508.2-201ENST00000607749 1894 ntBASIC20.46■□□□□ 0.87
HTTP42858 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.46■□□□□ 0.87
HTTP42858 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.46■□□□□ 0.87
HTTP42858 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.46■□□□□ 0.87
HTTP42858 PMPCAP1-201ENST00000508114 1576 ntBASIC20.46■□□□□ 0.87
HTTP42858 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.46■□□□□ 0.87
HTTP42858 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.46■□□□□ 0.87
HTTP42858 Z92544.3-201ENST00000624747 417 ntBASIC20.46■□□□□ 0.87
HTTP42858 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
HTTP42858 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.46■□□□□ 0.87
HTTP42858 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 AL158211.5-201ENST00000623583 2518 ntBASIC20.46■□□□□ 0.87
HTTP42858 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
HTTP42858 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HTTP42858 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.46■□□□□ 0.87
HTTP42858 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
HTTP42858 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
HTTP42858 TSEN15P1-201ENST00000423257 515 ntBASIC20.45■□□□□ 0.86
HTTP42858 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
HTTP42858 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
HTTP42858 GABARAPL3-202ENST00000624044 1851 ntBASIC20.45■□□□□ 0.86
HTTP42858 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.45■□□□□ 0.86
HTTP42858 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HTTP42858 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC20.45■□□□□ 0.86
HTTP42858 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
HTTP42858 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC20.45■□□□□ 0.86
HTTP42858 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.45■□□□□ 0.86
HTTP42858 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HTTP42858 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.44■□□□□ 0.86
HTTP42858 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.44■□□□□ 0.86
HTTP42858 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 GPR89P-201ENST00000407924 1495 ntBASIC20.44■□□□□ 0.86
HTTP42858 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 AL499627.1-201ENST00000569373 2188 ntBASIC20.44■□□□□ 0.86
HTTP42858 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
HTTP42858 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.44■□□□□ 0.86
HTTP42858 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms