Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HNF4AP41235 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HNF4AP41235 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HNF4AP41235 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.74■□□□□ 0.43
HNF4AP41235 AC005521.1-201ENST00000393351 872 ntBASIC17.74■□□□□ 0.43
HNF4AP41235 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.74■□□□□ 0.43
HNF4AP41235 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.74■□□□□ 0.43
HNF4AP41235 KRT18P57-201ENST00000443599 1254 ntBASIC17.74■□□□□ 0.43
HNF4AP41235 AC104390.1-201ENST00000555663 520 ntBASIC17.74■□□□□ 0.43
HNF4AP41235 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.74■□□□□ 0.43
HNF4AP41235 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.74■□□□□ 0.43
HNF4AP41235 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.74■□□□□ 0.43
HNF4AP41235 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.74■□□□□ 0.43
HNF4AP41235 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
HNF4AP41235 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HNF4AP41235 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.73■□□□□ 0.43
HNF4AP41235 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HNF4AP41235 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.73■□□□□ 0.43
HNF4AP41235 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.73■□□□□ 0.43
HNF4AP41235 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 AC113347.1-201ENST00000413321 391 ntBASIC17.73■□□□□ 0.43
HNF4AP41235 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.73■□□□□ 0.43
HNF4AP41235 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.73■□□□□ 0.43
HNF4AP41235 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HNF4AP41235 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HNF4AP41235 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HNF4AP41235 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.73■□□□□ 0.43
HNF4AP41235 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
HNF4AP41235 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 ESPNP-201ENST00000270691 2015 ntBASIC17.72■□□□□ 0.43
HNF4AP41235 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 NOC2LP1-202ENST00000452600 2235 ntBASIC17.72■□□□□ 0.43
HNF4AP41235 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 AC020916.1-201ENST00000587762 1774 ntBASIC17.72■□□□□ 0.43
HNF4AP41235 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HNF4AP41235 TERF1P1-201ENST00000311003 1181 ntBASIC17.72■□□□□ 0.43
HNF4AP41235 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.72■□□□□ 0.43
HNF4AP41235 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HNF4AP41235 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms