Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CIITAP33076 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.55■□□□□ 0.88
CIITAP33076 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.55■□□□□ 0.88
CIITAP33076 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.55■□□□□ 0.88
CIITAP33076 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 LINC00602-201ENST00000629776 2065 ntBASIC20.55■□□□□ 0.88
CIITAP33076 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CIITAP33076 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.54■□□□□ 0.88
CIITAP33076 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 AC132938.6-201ENST00000623828 1655 ntBASIC20.54■□□□□ 0.88
CIITAP33076 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.54■□□□□ 0.88
CIITAP33076 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CIITAP33076 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.54■□□□□ 0.88
CIITAP33076 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 DRAXINP1-201ENST00000437611 948 ntBASIC20.54■□□□□ 0.88
CIITAP33076 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.54■□□□□ 0.88
CIITAP33076 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CIITAP33076 AL353801.3-201ENST00000609898 542 ntBASIC20.54■□□□□ 0.88
CIITAP33076 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.54■□□□□ 0.88
CIITAP33076 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.54■□□□□ 0.88
CIITAP33076 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CIITAP33076 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.54■□□□□ 0.88
CIITAP33076 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CIITAP33076 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 GUSBP12-201ENST00000513727 720 ntBASIC20.53■□□□□ 0.88
CIITAP33076 AP002414.4-201ENST00000589764 1148 ntBASIC20.53■□□□□ 0.88
CIITAP33076 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.53■□□□□ 0.88
CIITAP33076 AC093458.2-201ENST00000623150 629 ntBASIC20.53■□□□□ 0.88
CIITAP33076 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.53■□□□□ 0.88
CIITAP33076 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 AC135776.1-201ENST00000319817 2481 ntBASIC20.53■□□□□ 0.88
CIITAP33076 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CIITAP33076 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CIITAP33076 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.53■□□□□ 0.88
CIITAP33076 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.52■□□□□ 0.88
CIITAP33076 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.52■□□□□ 0.88
CIITAP33076 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CIITAP33076 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.52■□□□□ 0.88
CIITAP33076 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CIITAP33076 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.52■□□□□ 0.88
CIITAP33076 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.52■□□□□ 0.88
CIITAP33076 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 KRT18P65-201ENST00000439811 1286 ntBASIC20.52■□□□□ 0.88
CIITAP33076 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CIITAP33076 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.52■□□□□ 0.88
CIITAP33076 TPSP2-201ENST00000561760 610 ntBASIC20.52■□□□□ 0.88
CIITAP33076 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.52■□□□□ 0.88
CIITAP33076 AL592071.1-201ENST00000611956 408 ntBASIC20.52■□□□□ 0.88
CIITAP33076 IGHV3-41-201ENST00000613121 348 ntBASIC20.52■□□□□ 0.88
CIITAP33076 AC009154.2-201ENST00000621177 724 ntBASIC20.52■□□□□ 0.88
CIITAP33076 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.52■□□□□ 0.88
CIITAP33076 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
CIITAP33076 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.52■□□□□ 0.88
CIITAP33076 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CIITAP33076 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CIITAP33076 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CIITAP33076 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CIITAP33076 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CIITAP33076 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms