Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SLC6A4P31645 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
SLC6A4P31645 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.72■□□□□ 0.59
SLC6A4P31645 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.72■□□□□ 0.59
SLC6A4P31645 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SLC6A4P31645 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 TOB2P1-201ENST00000469761 992 ntBASIC18.72■□□□□ 0.59
SLC6A4P31645 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.72■□□□□ 0.59
SLC6A4P31645 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.72■□□□□ 0.59
SLC6A4P31645 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
SLC6A4P31645 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC6A4P31645 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC6A4P31645 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.72■□□□□ 0.59
SLC6A4P31645 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.72■□□□□ 0.59
SLC6A4P31645 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.72■□□□□ 0.59
SLC6A4P31645 LINC00167-201ENST00000530583 1419 ntBASIC18.72■□□□□ 0.59
SLC6A4P31645 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.72■□□□□ 0.59
SLC6A4P31645 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SLC6A4P31645 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SLC6A4P31645 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC6A4P31645 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SLC6A4P31645 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SLC6A4P31645 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SLC6A4P31645 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.71■□□□□ 0.59
SLC6A4P31645 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
SLC6A4P31645 AL845331.1-201ENST00000424978 1190 ntBASIC18.71■□□□□ 0.59
SLC6A4P31645 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.71■□□□□ 0.59
SLC6A4P31645 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 DUSP5P1-201ENST00000441325 1139 ntBASIC18.71■□□□□ 0.59
SLC6A4P31645 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.71■□□□□ 0.59
SLC6A4P31645 LINC00265-3P-201ENST00000447588 903 ntBASIC18.71■□□□□ 0.59
SLC6A4P31645 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.71■□□□□ 0.59
SLC6A4P31645 GUSBP12-201ENST00000513727 720 ntBASIC18.71■□□□□ 0.59
SLC6A4P31645 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.71■□□□□ 0.59
SLC6A4P31645 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
SLC6A4P31645 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.71■□□□□ 0.59
SLC6A4P31645 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC6A4P31645 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SLC6A4P31645 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.58
SLC6A4P31645 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SLC6A4P31645 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC6A4P31645 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
SLC6A4P31645 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC6A4P31645 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC6A4P31645 AC091607.1-201ENST00000490318 1060 ntBASIC18.7■□□□□ 0.58
SLC6A4P31645 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.7■□□□□ 0.58
SLC6A4P31645 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC6A4P31645 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.7■□□□□ 0.58
SLC6A4P31645 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC6A4P31645 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SLC6A4P31645 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC6A4P31645 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms