Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 MCCD1P1-208ENST00000445732 328 ntBASIC13.96□□□□□ -0.17
HLA-DMBP28068 TSPY15P-201ENST00000457163 923 ntBASIC13.96□□□□□ -0.17
HLA-DMBP28068 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 SNX21-213ENST00000614929 587 ntTSL 5 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
HLA-DMBP28068 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 MIR564-202ENST00000385049 94 ntBASIC13.95□□□□□ -0.18
HLA-DMBP28068 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 ECEL1P3-201ENST00000427961 737 ntBASIC13.95□□□□□ -0.18
HLA-DMBP28068 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 AC097488.1-201ENST00000507834 756 ntBASIC13.95□□□□□ -0.18
HLA-DMBP28068 NUDT16P1-203ENST00000513809 620 ntBASIC13.95□□□□□ -0.18
HLA-DMBP28068 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 EML3-212ENST00000494176 2901 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 EML3-216ENST00000529309 2909 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 AC134043.2-201ENST00000624206 2238 ntBASIC13.95□□□□□ -0.18
HLA-DMBP28068 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC13.95□□□□□ -0.18
HLA-DMBP28068 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HLA-DMBP28068 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HLA-DMBP28068 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 AC211429.1-201ENST00000415277 523 ntBASIC13.94□□□□□ -0.18
HLA-DMBP28068 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.94□□□□□ -0.18
HLA-DMBP28068 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms