Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 NEAT1-202ENST00000501122 22743 ntBASIC5.03□□□□□ -1.62e-24■□□□□ 8.1
SMNDC1O75940 LARP4-208ENST00000520064 2068 ntTSL 512.15□□□□□ -0.461e-323■□□□□ 8.1
SMNDC1O75940 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.036e-11■□□□□ 8.1
SMNDC1O75940 IL17RB-201ENST00000288167 2010 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.636e-11■□□□□ 8.1
SMNDC1O75940 IL17RB-203ENST00000494338 1048 ntTSL 510.82□□□□□ -0.686e-11■□□□□ 8.1
SMNDC1O75940 IL17RB-202ENST00000475124 2822 ntTSL 210.22□□□□□ -0.776e-11■□□□□ 8.1
SMNDC1O75940 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.1■□□□□ 0.658e-7■□□□□ 8
SMNDC1O75940 ZDHHC7-202ENST00000344861 2727 ntTSL 1 (best)18.21■□□□□ 0.518e-7■□□□□ 8
SMNDC1O75940 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.58e-7■□□□□ 8
SMNDC1O75940 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.388e-7■□□□□ 8
SMNDC1O75940 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.178e-7■□□□□ 8
SMNDC1O75940 GUK1-231ENST00000485859 325 ntTSL 1 (best)15.59■□□□□ 0.092e-8■□□□□ 8
SMNDC1O75940 ZDHHC7-201ENST00000313732 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.188e-7■□□□□ 8
SMNDC1O75940 PFKFB4-206ENST00000422701 636 ntTSL 313.73□□□□□ -0.218e-7■□□□□ 8
SMNDC1O75940 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.238e-7■□□□□ 8
SMNDC1O75940 PFKFB4-215ENST00000496767 779 ntTSL 513.6□□□□□ -0.238e-7■□□□□ 8
SMNDC1O75940 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC12.84□□□□□ -0.358e-7■□□□□ 8
SMNDC1O75940 PFKFB4-209ENST00000467176 643 ntTSL 312.72□□□□□ -0.378e-7■□□□□ 8
SMNDC1O75940 ZDHHC7-208ENST00000569488 620 ntTSL 312.35□□□□□ -0.438e-7■□□□□ 8
SMNDC1O75940 PFKFB4-214ENST00000490404 849 ntTSL 39.15□□□□□ -0.948e-7■□□□□ 8
SMNDC1O75940 ACACA-245ENST00000619546 5315 ntTSL 1 (best)9.06□□□□□ -0.968e-7■□□□□ 8
SMNDC1O75940 ASXL1-204ENST00000470145 1073 ntTSL 58.82□□□□□ -18e-7■□□□□ 8
SMNDC1O75940 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.21□□□□□ -1.258e-7■□□□□ 8
SMNDC1O75940 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.318e-7■□□□□ 8
SMNDC1O75940 ZDHHC7-205ENST00000566909 582 ntTSL 26.76□□□□□ -1.338e-7■□□□□ 8
SMNDC1O75940 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.53□□□□□ -1.368e-7■□□□□ 8
SMNDC1O75940 ACACA-244ENST00000619245 635 ntTSL 35.29□□□□□ -1.568e-7■□□□□ 8
SMNDC1O75940 EFHC1-204ENST00000491749 496 ntTSL 422.25■■□□□ 1.152e-6■□□□□ 8
SMNDC1O75940 COL9A3-213ENST00000489045 838 ntTSL 520.71■□□□□ 0.912e-6■□□□□ 8
SMNDC1O75940 COL9A3-202ENST00000452372 596 ntTSL 517.76■□□□□ 0.432e-6■□□□□ 8
SMNDC1O75940 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.84■□□□□ 0.292e-6■□□□□ 8
SMNDC1O75940 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.67■□□□□ 0.262e-6■□□□□ 8
SMNDC1O75940 EEF1D-208ENST00000524883 828 ntTSL 216.58■□□□□ 0.242e-6■□□□□ 8
SMNDC1O75940 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.2■□□□□ 0.182e-6■□□□□ 8
SMNDC1O75940 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.182e-6■□□□□ 8
SMNDC1O75940 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.13■□□□□ 0.172e-6■□□□□ 8
SMNDC1O75940 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.12e-6■□□□□ 8
SMNDC1O75940 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.12e-6■□□□□ 8
SMNDC1O75940 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.08■□□□□ 02e-6■□□□□ 8
SMNDC1O75940 PLXNB1-207ENST00000464294 1025 ntTSL 214.9□□□□□ -0.025e-12■□□□□ 8
SMNDC1O75940 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.85□□□□□ -0.032e-6■□□□□ 8
SMNDC1O75940 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.48□□□□□ -0.092e-6■□□□□ 8
SMNDC1O75940 MRPL52-213ENST00000556465 220 ntTSL 314.18□□□□□ -0.142e-6■□□□□ 8
SMNDC1O75940 EFHC1-235ENST00000637849 2746 ntTSL 514.09□□□□□ -0.152e-6■□□□□ 8
SMNDC1O75940 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.99□□□□□ -0.172e-6■□□□□ 8
SMNDC1O75940 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.79□□□□□ -0.22e-6■□□□□ 8
SMNDC1O75940 CHRD-209ENST00000461120 683 ntTSL 1 (best)12.2□□□□□ -0.462e-6■□□□□ 8
SMNDC1O75940 PAQR8-203ENST00000512121 582 ntTSL 311.73□□□□□ -0.532e-6■□□□□ 8
SMNDC1O75940 MRPL52-205ENST00000432849 411 ntTSL 2 BASIC10.35□□□□□ -0.752e-6■□□□□ 8
SMNDC1O75940 MRPL52-204ENST00000397505 333 ntTSL 5 BASIC9.45□□□□□ -0.92e-6■□□□□ 8
SMNDC1O75940 MRPL52-214ENST00000556654 362 ntTSL 36.66□□□□□ -1.342e-6■□□□□ 8
SMNDC1O75940 MRPL52-209ENST00000553965 327 ntTSL 23.63□□□□□ -1.832e-6■□□□□ 8
SMNDC1O75940 TF-202ENST00000414694 546 ntTSL 416.8■□□□□ 0.282e-9■□□□□ 8
SMNDC1O75940 TF-210ENST00000482271 659 ntTSL 416.8■□□□□ 0.282e-9■□□□□ 8
SMNDC1O75940 TF-211ENST00000485977 580 ntTSL 316.8■□□□□ 0.282e-9■□□□□ 8
SMNDC1O75940 TF-212ENST00000493011 999 ntTSL 216.8■□□□□ 0.282e-9■□□□□ 8
SMNDC1O75940 TF-213ENST00000494430 594 ntTSL 416.8■□□□□ 0.282e-9■□□□□ 8
SMNDC1O75940 TF-206ENST00000466911 526 ntTSL 414.4□□□□□ -0.12e-9■□□□□ 8
SMNDC1O75940 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.282e-9■□□□□ 8
SMNDC1O75940 TF-209ENST00000475382 586 ntTSL 48.09□□□□□ -1.112e-9■□□□□ 8
SMNDC1O75940 TF-214ENST00000498622 719 ntTSL 27.38□□□□□ -1.232e-9■□□□□ 8
SMNDC1O75940 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.34□□□□□ -1.392e-9■□□□□ 8
Retrieved 62 of 11,362 protein–RNA pairs in 109.5 ms