Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 AC005104.2-201ENST00000427818 678 ntBASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIMD1Q9UGP4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 TEX21P-204ENST00000641479 1693 ntBASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 AC018712.1-201ENST00000455767 687 ntBASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMD1Q9UGP4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 KRT89P-201ENST00000620027 1478 ntBASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 MIR7706-201ENST00000613747 67 ntBASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 FAM215A-202ENST00000632077 792 ntBASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMD1Q9UGP4 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 AC114341.1-201ENST00000618070 349 ntBASIC19.03■□□□□ 0.64
LIMD1Q9UGP4 AL691403.2-201ENST00000618460 490 ntBASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms