Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 RBM17P3-201ENST00000417687 1192 ntBASIC23.19■■□□□ 1.3
USP42Q9H9J4 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 SCARNA2-201ENST00000458748 420 ntBASIC23.19■■□□□ 1.3
USP42Q9H9J4 KRT18P41-201ENST00000518924 1277 ntBASIC23.19■■□□□ 1.3
USP42Q9H9J4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 AC083906.6-201ENST00000641366 219 ntBASIC23.19■■□□□ 1.3
USP42Q9H9J4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 AL163051.1-201ENST00000569214 1512 ntBASIC23.19■■□□□ 1.3
USP42Q9H9J4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 FAM220CP-201ENST00000395253 831 ntBASIC23.18■■□□□ 1.3
USP42Q9H9J4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 AP001269.4-201ENST00000609611 512 ntBASIC23.18■■□□□ 1.3
USP42Q9H9J4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP42Q9H9J4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC23.18■■□□□ 1.3
USP42Q9H9J4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 TP73-AS1-210ENST00000637775 1455 ntBASIC23.17■■□□□ 1.3
USP42Q9H9J4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 AC113404.2-201ENST00000507884 177 ntBASIC23.17■■□□□ 1.3
USP42Q9H9J4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 AC116407.3-201ENST00000623905 1129 ntBASIC23.17■■□□□ 1.3
USP42Q9H9J4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 HEIH-201ENST00000623091 1652 ntBASIC23.17■■□□□ 1.3
USP42Q9H9J4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC23.17■■□□□ 1.3
USP42Q9H9J4 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP42Q9H9J4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 ZNF259P1-201ENST00000407656 1365 ntBASIC23.16■■□□□ 1.3
USP42Q9H9J4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 MTMR9LP-203ENST00000426597 1545 ntBASIC23.16■■□□□ 1.3
USP42Q9H9J4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 MIR940-201ENST00000401276 94 ntBASIC23.16■■□□□ 1.3
USP42Q9H9J4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
USP42Q9H9J4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP42Q9H9J4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms