Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 AL161938.1-201ENST00000569833 2180 ntBASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 NEFHP1-201ENST00000412845 2629 ntBASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRAIPQ9BWF2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 AC026396.1-201ENST00000419388 421 ntBASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 RN7SL606P-201ENST00000472779 293 ntBASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAIPQ9BWF2 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRAIPQ9BWF2 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 TSPY19P-201ENST00000418461 509 ntBASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 TSPY18P-201ENST00000441642 509 ntBASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 AC111152.3-201ENST00000569699 673 ntBASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TRAIPQ9BWF2 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20■□□□□ 0.79
TRAIPQ9BWF2 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAIPQ9BWF2 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20■□□□□ 0.79
TRAIPQ9BWF2 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAIPQ9BWF2 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TRAIPQ9BWF2 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAIPQ9BWF2 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms