Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 AL118508.1-201ENST00000613502 2345 ntBASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC28BQ9BUN5 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 AC004951.3-201ENST00000418645 1148 ntBASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 CKBP1-201ENST00000565489 1086 ntBASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC28BQ9BUN5 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 MIR564-202ENST00000385049 94 ntBASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 NIFKP9-201ENST00000419265 221 ntBASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 KRT17P3-201ENST00000420566 1262 ntBASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 AC069544.1-201ENST00000609399 999 ntBASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28BQ9BUN5 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.81■□□□□ 0.44
CCDC28BQ9BUN5 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms