Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 Z69720.1-201ENST00000601483 472 ntBASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 AC120114.3-201ENST00000611923 658 ntBASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDDC3Q8N4P3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 AL499627.1-201ENST00000569373 2188 ntBASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 AL353801.3-201ENST00000609898 542 ntBASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDDC3Q8N4P3 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
HDDC3Q8N4P3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HDDC3Q8N4P3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDDC3Q8N4P3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
HDDC3Q8N4P3 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDDC3Q8N4P3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDDC3Q8N4P3 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 VENTXP7-201ENST00000475503 772 ntBASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 AC008687.5-201ENST00000593746 558 ntBASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 AC099336.1-202ENST00000602961 463 ntBASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 AC064862.7-201ENST00000604520 867 ntBASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.33■□□□□ 0.52
HDDC3Q8N4P3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDDC3Q8N4P3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms